miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 119265 0.66 0.978199
Target:  5'- cCCUGcUCCGGuagucACCGUcccUCAACCucaGCCg -3'
miRNA:   3'- -GGACcAGGCC-----UGGCAac-AGUUGG---UGG- -5'
28842 5' -54.3 NC_006146.1 + 100911 0.66 0.978199
Target:  5'- gCCguggGGUCCccGACCGUgcUGUUcuuGGCCAUCc -3'
miRNA:   3'- -GGa---CCAGGc-CUGGCA--ACAG---UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 48996 0.66 0.975825
Target:  5'- aCCUGGgaggCUGGGgCGUUGccCAGCUuggggACCu -3'
miRNA:   3'- -GGACCa---GGCCUgGCAACa-GUUGG-----UGG- -5'
28842 5' -54.3 NC_006146.1 + 33959 0.66 0.973269
Target:  5'- gCUGGUCCGGGUgGgcGUgGuCCGCUg -3'
miRNA:   3'- gGACCAGGCCUGgCaaCAgUuGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 52449 0.66 0.973269
Target:  5'- aCUGGgCCaccCCGUUG-UAGCCGCCg -3'
miRNA:   3'- gGACCaGGccuGGCAACaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 123933 0.66 0.973269
Target:  5'- uCCUGGcggcggCCGGGCCGgcGaaauacgCGGgCACCc -3'
miRNA:   3'- -GGACCa-----GGCCUGGCaaCa------GUUgGUGG- -5'
28842 5' -54.3 NC_006146.1 + 60322 0.66 0.973269
Target:  5'- aCCUGacCCGGACCGUggcgagUGUCuACuCugCg -3'
miRNA:   3'- -GGACcaGGCCUGGCA------ACAGuUG-GugG- -5'
28842 5' -54.3 NC_006146.1 + 45685 0.66 0.970522
Target:  5'- cCCUGGauugCUGGAUCcugcaCGACCGCCa -3'
miRNA:   3'- -GGACCa---GGCCUGGcaacaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 64707 0.66 0.970522
Target:  5'- cCCUGGcaggaggcCCGGGacCCG-UGUCAGCagGCCg -3'
miRNA:   3'- -GGACCa-------GGCCU--GGCaACAGUUGg-UGG- -5'
28842 5' -54.3 NC_006146.1 + 125930 0.66 0.970522
Target:  5'- --gGGUCCGGccACCGcgGUCGAguCCcCCg -3'
miRNA:   3'- ggaCCAGGCC--UGGCaaCAGUU--GGuGG- -5'
28842 5' -54.3 NC_006146.1 + 90837 0.66 0.969659
Target:  5'- gCUGGgaccgcguucgagaUCaCGGcACCGcUGUCuGGCCGCCa -3'
miRNA:   3'- gGACC--------------AG-GCC-UGGCaACAG-UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135513 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135420 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135327 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135234 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 136163 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 136070 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135977 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135791 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135699 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.