Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28842 | 5' | -54.3 | NC_006146.1 | + | 97420 | 0.69 | 0.883844 |
Target: 5'- gCCUGGUgCUGGAa----GUUAACCGCCa -3' miRNA: 3'- -GGACCA-GGCCUggcaaCAGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 33215 | 0.69 | 0.915303 |
Target: 5'- uCCUGGugcUCCGGggcaGCCGgg--UGGCCGCCg -3' miRNA: 3'- -GGACC---AGGCC----UGGCaacaGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 142703 | 0.68 | 0.931438 |
Target: 5'- --cGGUCUGGugCGUUGauguguuuUCGguACCAUCg -3' miRNA: 3'- ggaCCAGGCCugGCAAC--------AGU--UGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 139232 | 0.68 | 0.936353 |
Target: 5'- cCCUGGUCCcuGGGCUGUuugccugaggugUGUUuguGACUGCUg -3' miRNA: 3'- -GGACCAGG--CCUGGCA------------ACAG---UUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 18379 | 0.68 | 0.936353 |
Target: 5'- cCCUGGUCCuGGugGCCGggGUgGugauccuagucAUCACCc -3' miRNA: 3'- -GGACCAGG-CC--UGGCaaCAgU-----------UGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 57241 | 0.68 | 0.931438 |
Target: 5'- -gUGGUCCacGGGcCCGUgGUCAGCaagGCCa -3' miRNA: 3'- ggACCAGG--CCU-GGCAaCAGUUGg--UGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 60424 | 0.68 | 0.926291 |
Target: 5'- aCCUGG-CCGGGgUGgaaUGUCAgACCAUg -3' miRNA: 3'- -GGACCaGGCCUgGCa--ACAGU-UGGUGg -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 52633 | 0.68 | 0.928377 |
Target: 5'- uCCUGGaCCGGGCCGagaacaugggcUcuggcccccaguacgUGcgCAGCCGCCu -3' miRNA: 3'- -GGACCaGGCCUGGC-----------A---------------ACa-GUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 33330 | 0.68 | 0.936353 |
Target: 5'- uCCggGGUCCGGGugcuCCGggG-CAgccgggugGCCGCCg -3' miRNA: 3'- -GGa-CCAGGCCU----GGCaaCaGU--------UGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 157263 | 0.68 | 0.936353 |
Target: 5'- gCCUGuGUCCGGcGCUugaucGUCAGCC-CCa -3' miRNA: 3'- -GGAC-CAGGCC-UGGcaa--CAGUUGGuGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 55042 | 0.68 | 0.926291 |
Target: 5'- --gGGUCgGGGCCGggGcCuGCCACa -3' miRNA: 3'- ggaCCAGgCCUGGCaaCaGuUGGUGg -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 63289 | 0.68 | 0.941038 |
Target: 5'- cCCUGGcaccUCCGGuauCUGUcccUGUCuGCUGCCc -3' miRNA: 3'- -GGACC----AGGCCu--GGCA---ACAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 57229 | 0.68 | 0.936832 |
Target: 5'- gCCgGGcCCGGGCCcgagccaccucucGUCGACCAUCa -3' miRNA: 3'- -GGaCCaGGCCUGGcaa----------CAGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 148526 | 0.67 | 0.964432 |
Target: 5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3' miRNA: 3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 151604 | 0.67 | 0.964432 |
Target: 5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3' miRNA: 3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 145448 | 0.67 | 0.964432 |
Target: 5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3' miRNA: 3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 13317 | 0.67 | 0.945494 |
Target: 5'- gCUGGgcaCCaGGGCgGUggaGUCGGCCGCg -3' miRNA: 3'- gGACCa--GG-CCUGgCAa--CAGUUGGUGg -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 23738 | 0.67 | 0.945494 |
Target: 5'- gCC-GGUCUGcGCCGccgccggGUCAACUGCCg -3' miRNA: 3'- -GGaCCAGGCcUGGCaa-----CAGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 142370 | 0.67 | 0.964432 |
Target: 5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3' miRNA: 3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 56766 | 0.67 | 0.964432 |
Target: 5'- gCCUGGUCCGGAgCCucaucCGACaugaaCACCa -3' miRNA: 3'- -GGACCAGGCCU-GGcaacaGUUG-----GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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