miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 119411 0.69 0.903395
Target:  5'- gCCUGaucaUCCGGuACC--UGUCAcACCACCa -3'
miRNA:   3'- -GGACc---AGGCC-UGGcaACAGU-UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 33215 0.69 0.915303
Target:  5'- uCCUGGugcUCCGGggcaGCCGgg--UGGCCGCCg -3'
miRNA:   3'- -GGACC---AGGCC----UGGCaacaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 60424 0.68 0.926291
Target:  5'- aCCUGG-CCGGGgUGgaaUGUCAgACCAUg -3'
miRNA:   3'- -GGACCaGGCCUgGCa--ACAGU-UGGUGg -5'
28842 5' -54.3 NC_006146.1 + 55042 0.68 0.926291
Target:  5'- --gGGUCgGGGCCGggGcCuGCCACa -3'
miRNA:   3'- ggaCCAGgCCUGGCaaCaGuUGGUGg -5'
28842 5' -54.3 NC_006146.1 + 52633 0.68 0.928377
Target:  5'- uCCUGGaCCGGGCCGagaacaugggcUcuggcccccaguacgUGcgCAGCCGCCu -3'
miRNA:   3'- -GGACCaGGCCUGGC-----------A---------------ACa-GUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 142703 0.68 0.931438
Target:  5'- --cGGUCUGGugCGUUGauguguuuUCGguACCAUCg -3'
miRNA:   3'- ggaCCAGGCCugGCAAC--------AGU--UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 57241 0.68 0.931438
Target:  5'- -gUGGUCCacGGGcCCGUgGUCAGCaagGCCa -3'
miRNA:   3'- ggACCAGG--CCU-GGCAaCAGUUGg--UGG- -5'
28842 5' -54.3 NC_006146.1 + 33330 0.68 0.936353
Target:  5'- uCCggGGUCCGGGugcuCCGggG-CAgccgggugGCCGCCg -3'
miRNA:   3'- -GGa-CCAGGCCU----GGCaaCaGU--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 18379 0.68 0.936353
Target:  5'- cCCUGGUCCuGGugGCCGggGUgGugauccuagucAUCACCc -3'
miRNA:   3'- -GGACCAGG-CC--UGGCaaCAgU-----------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 157263 0.68 0.936353
Target:  5'- gCCUGuGUCCGGcGCUugaucGUCAGCC-CCa -3'
miRNA:   3'- -GGAC-CAGGCC-UGGcaa--CAGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 139232 0.68 0.936353
Target:  5'- cCCUGGUCCcuGGGCUGUuugccugaggugUGUUuguGACUGCUg -3'
miRNA:   3'- -GGACCAGG--CCUGGCA------------ACAG---UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 57229 0.68 0.936832
Target:  5'- gCCgGGcCCGGGCCcgagccaccucucGUCGACCAUCa -3'
miRNA:   3'- -GGaCCaGGCCUGGcaa----------CAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 63289 0.68 0.941038
Target:  5'- cCCUGGcaccUCCGGuauCUGUcccUGUCuGCUGCCc -3'
miRNA:   3'- -GGACC----AGGCCu--GGCA---ACAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 13317 0.67 0.945494
Target:  5'- gCUGGgcaCCaGGGCgGUggaGUCGGCCGCg -3'
miRNA:   3'- gGACCa--GG-CCUGgCAa--CAGUUGGUGg -5'
28842 5' -54.3 NC_006146.1 + 127177 0.67 0.945494
Target:  5'- aCCUGGcCCGGGCgGagGaaauCCGCCa -3'
miRNA:   3'- -GGACCaGGCCUGgCaaCaguuGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 23738 0.67 0.945494
Target:  5'- gCC-GGUCUGcGCCGccgccggGUCAACUGCCg -3'
miRNA:   3'- -GGaCCAGGCcUGGCaa-----CAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 165960 0.67 0.948058
Target:  5'- cCCUGGUCCccgGGGCacagagcaCGGCCACCc -3'
miRNA:   3'- -GGACCAGG---CCUGgcaaca--GUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 75724 0.67 0.953727
Target:  5'- aCCUGGccaaguaCUGGACCGUgcUCuccgacaucGCCGCCg -3'
miRNA:   3'- -GGACCa------GGCCUGGCAacAGu--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 154682 0.67 0.953727
Target:  5'- gCCUGGgagUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGACC---AGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 20242 0.67 0.953727
Target:  5'- cCCUGGUCaUGGAUC--UGcUCAACCAUUu -3'
miRNA:   3'- -GGACCAG-GCCUGGcaAC-AGUUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.