miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 154682 0.67 0.953727
Target:  5'- gCCUGGgagUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGACC---AGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 58694 0.67 0.957511
Target:  5'- cCCUGGU-CGGACUGguaccUGUUugAGCC-CCa -3'
miRNA:   3'- -GGACCAgGCCUGGCa----ACAG--UUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 49250 0.67 0.957511
Target:  5'- uCCgGGUCCaGGGCCGg---UAGCCcCCu -3'
miRNA:   3'- -GGaCCAGG-CCUGGCaacaGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 45228 0.67 0.961078
Target:  5'- cUCUGGaaCCGGACggaggcuggggUGUUGUCGGCCGa- -3'
miRNA:   3'- -GGACCa-GGCCUG-----------GCAACAGUUGGUgg -5'
28842 5' -54.3 NC_006146.1 + 68939 0.67 0.961078
Target:  5'- gCCUGGgcCCaGGagaucuccGCCGUUGUCucaucggucACCGCCc -3'
miRNA:   3'- -GGACCa-GG-CC--------UGGCAACAGu--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 157681 0.67 0.962445
Target:  5'- aCUGGUCUGGccGCaggccuucaggauggCGUUGUUgAGCCGCUg -3'
miRNA:   3'- gGACCAGGCC--UG---------------GCAACAG-UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 148526 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 123503 0.67 0.964432
Target:  5'- gCUGGcCCuGGCCacgGUCGACC-CCa -3'
miRNA:   3'- gGACCaGGcCUGGcaaCAGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 142370 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 145448 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 56766 0.67 0.964432
Target:  5'- gCCUGGUCCGGAgCCucaucCGACaugaaCACCa -3'
miRNA:   3'- -GGACCAGGCCU-GGcaacaGUUG-----GUGG- -5'
28842 5' -54.3 NC_006146.1 + 151604 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 157759 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 55146 0.67 0.964432
Target:  5'- ----aUCgGGACCcccaaUGUCAGCCGCCg -3'
miRNA:   3'- ggaccAGgCCUGGca---ACAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135606 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135513 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135141 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135420 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135327 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135234 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.