miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 148526 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 151604 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 157759 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 55146 0.67 0.964432
Target:  5'- ----aUCgGGACCcccaaUGUCAGCCGCCg -3'
miRNA:   3'- ggaccAGgCCUGGca---ACAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 123503 0.67 0.964432
Target:  5'- gCUGGcCCuGGCCacgGUCGACC-CCa -3'
miRNA:   3'- gGACCaGGcCUGGcaaCAGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 157681 0.67 0.962445
Target:  5'- aCUGGUCUGGccGCaggccuucaggauggCGUUGUUgAGCCGCUg -3'
miRNA:   3'- gGACCAGGCC--UG---------------GCAACAG-UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 45228 0.67 0.961078
Target:  5'- cUCUGGaaCCGGACggaggcuggggUGUUGUCGGCCGa- -3'
miRNA:   3'- -GGACCa-GGCCUG-----------GCAACAGUUGGUgg -5'
28842 5' -54.3 NC_006146.1 + 68939 0.67 0.961078
Target:  5'- gCCUGGgcCCaGGagaucuccGCCGUUGUCucaucggucACCGCCc -3'
miRNA:   3'- -GGACCa-GG-CC--------UGGCAACAGu--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 58694 0.67 0.957511
Target:  5'- cCCUGGU-CGGACUGguaccUGUUugAGCC-CCa -3'
miRNA:   3'- -GGACCAgGCCUGGCa----ACAG--UUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 49250 0.67 0.957511
Target:  5'- uCCgGGUCCaGGGCCGg---UAGCCcCCu -3'
miRNA:   3'- -GGaCCAGG-CCUGGCaacaGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 168622 0.67 0.953727
Target:  5'- gCCUGGcUCCGGugaccucaaaGCCaaacUGUCGGCCAagcCCa -3'
miRNA:   3'- -GGACC-AGGCC----------UGGca--ACAGUUGGU---GG- -5'
28842 5' -54.3 NC_006146.1 + 75724 0.67 0.953727
Target:  5'- aCCUGGccaaguaCUGGACCGUgcUCuccgacaucGCCGCCg -3'
miRNA:   3'- -GGACCa------GGCCUGGCAacAGu--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 20242 0.67 0.953727
Target:  5'- cCCUGGUCaUGGAUC--UGcUCAACCAUUu -3'
miRNA:   3'- -GGACCAG-GCCUGGcaAC-AGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 154682 0.67 0.953727
Target:  5'- gCCUGGgagUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGACC---AGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 165960 0.67 0.948058
Target:  5'- cCCUGGUCCccgGGGCacagagcaCGGCCACCc -3'
miRNA:   3'- -GGACCAGG---CCUGgcaaca--GUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 127177 0.67 0.945494
Target:  5'- aCCUGGcCCGGGCgGagGaaauCCGCCa -3'
miRNA:   3'- -GGACCaGGCCUGgCaaCaguuGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 13317 0.67 0.945494
Target:  5'- gCUGGgcaCCaGGGCgGUggaGUCGGCCGCg -3'
miRNA:   3'- gGACCa--GG-CCUGgCAa--CAGUUGGUGg -5'
28842 5' -54.3 NC_006146.1 + 23738 0.67 0.945494
Target:  5'- gCC-GGUCUGcGCCGccgccggGUCAACUGCCg -3'
miRNA:   3'- -GGaCCAGGCcUGGCaa-----CAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 63289 0.68 0.941038
Target:  5'- cCCUGGcaccUCCGGuauCUGUcccUGUCuGCUGCCc -3'
miRNA:   3'- -GGACC----AGGCCu--GGCA---ACAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 57229 0.68 0.936832
Target:  5'- gCCgGGcCCGGGCCcgagccaccucucGUCGACCAUCa -3'
miRNA:   3'- -GGaCCaGGCCUGGcaa----------CAGUUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.