miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 13317 0.67 0.945494
Target:  5'- gCUGGgcaCCaGGGCgGUggaGUCGGCCGCg -3'
miRNA:   3'- gGACCa--GG-CCUGgCAa--CAGUUGGUGg -5'
28842 5' -54.3 NC_006146.1 + 18379 0.68 0.936353
Target:  5'- cCCUGGUCCuGGugGCCGggGUgGugauccuagucAUCACCc -3'
miRNA:   3'- -GGACCAGG-CC--UGGCaaCAgU-----------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 20242 0.67 0.953727
Target:  5'- cCCUGGUCaUGGAUC--UGcUCAACCAUUu -3'
miRNA:   3'- -GGACCAG-GCCUGGcaAC-AGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 23738 0.67 0.945494
Target:  5'- gCC-GGUCUGcGCCGccgccggGUCAACUGCCg -3'
miRNA:   3'- -GGaCCAGGCcUGGCaa-----CAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 33215 0.69 0.915303
Target:  5'- uCCUGGugcUCCGGggcaGCCGgg--UGGCCGCCg -3'
miRNA:   3'- -GGACC---AGGCC----UGGCaacaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 33330 0.68 0.936353
Target:  5'- uCCggGGUCCGGGugcuCCGggG-CAgccgggugGCCGCCg -3'
miRNA:   3'- -GGa-CCAGGCCU----GGCaaCaGU--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 33959 0.66 0.973269
Target:  5'- gCUGGUCCGGGUgGgcGUgGuCCGCUg -3'
miRNA:   3'- gGACCAGGCCUGgCaaCAgUuGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 40960 0.71 0.822598
Target:  5'- cCCaGGUCCGuGCCGUa---GACCGCCg -3'
miRNA:   3'- -GGaCCAGGCcUGGCAacagUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 43514 0.77 0.503716
Target:  5'- --gGGUCCGGGCCaggcUGcCGGCCACCa -3'
miRNA:   3'- ggaCCAGGCCUGGca--ACaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 45228 0.67 0.961078
Target:  5'- cUCUGGaaCCGGACggaggcuggggUGUUGUCGGCCGa- -3'
miRNA:   3'- -GGACCa-GGCCUG-----------GCAACAGUUGGUgg -5'
28842 5' -54.3 NC_006146.1 + 45685 0.66 0.970522
Target:  5'- cCCUGGauugCUGGAUCcugcaCGACCGCCa -3'
miRNA:   3'- -GGACCa---GGCCUGGcaacaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 48996 0.66 0.975825
Target:  5'- aCCUGGgaggCUGGGgCGUUGccCAGCUuggggACCu -3'
miRNA:   3'- -GGACCa---GGCCUgGCAACa-GUUGG-----UGG- -5'
28842 5' -54.3 NC_006146.1 + 49250 0.67 0.957511
Target:  5'- uCCgGGUCCaGGGCCGg---UAGCCcCCu -3'
miRNA:   3'- -GGaCCAGG-CCUGGCaacaGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 49475 0.69 0.8971
Target:  5'- -aUGGUgaGGGCCGcggUGUCGGCCAg- -3'
miRNA:   3'- ggACCAggCCUGGCa--ACAGUUGGUgg -5'
28842 5' -54.3 NC_006146.1 + 52449 0.66 0.973269
Target:  5'- aCUGGgCCaccCCGUUG-UAGCCGCCg -3'
miRNA:   3'- gGACCaGGccuGGCAACaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 52633 0.68 0.928377
Target:  5'- uCCUGGaCCGGGCCGagaacaugggcUcuggcccccaguacgUGcgCAGCCGCCu -3'
miRNA:   3'- -GGACCaGGCCUGGC-----------A---------------ACa-GUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 54456 0.71 0.839052
Target:  5'- gCUGG-CCuacaauGGGCCGguuuUCAGCCACCa -3'
miRNA:   3'- gGACCaGG------CCUGGCaac-AGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 55042 0.68 0.926291
Target:  5'- --gGGUCgGGGCCGggGcCuGCCACa -3'
miRNA:   3'- ggaCCAGgCCUGGCaaCaGuUGGUGg -5'
28842 5' -54.3 NC_006146.1 + 55146 0.67 0.964432
Target:  5'- ----aUCgGGACCcccaaUGUCAGCCGCCg -3'
miRNA:   3'- ggaccAGgCCUGGca---ACAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 56082 0.7 0.87689
Target:  5'- -----aCCGGGCCaaguaggUGUCGGCCACCa -3'
miRNA:   3'- ggaccaGGCCUGGca-----ACAGUUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.