miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 56766 0.67 0.964432
Target:  5'- gCCUGGUCCGGAgCCucaucCGACaugaaCACCa -3'
miRNA:   3'- -GGACCAGGCCU-GGcaacaGUUG-----GUGG- -5'
28842 5' -54.3 NC_006146.1 + 57127 0.69 0.8971
Target:  5'- -aUGGUCCcuaauuucgggGGGCUGgugGcCGACCGCCg -3'
miRNA:   3'- ggACCAGG-----------CCUGGCaa-CaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 57229 0.68 0.936832
Target:  5'- gCCgGGcCCGGGCCcgagccaccucucGUCGACCAUCa -3'
miRNA:   3'- -GGaCCaGGCCUGGcaa----------CAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 57241 0.68 0.931438
Target:  5'- -gUGGUCCacGGGcCCGUgGUCAGCaagGCCa -3'
miRNA:   3'- ggACCAGG--CCU-GGCAaCAGUUGg--UGG- -5'
28842 5' -54.3 NC_006146.1 + 58152 0.69 0.903395
Target:  5'- gCCUGG-CCGGcuuCUGcgccUCGACCACCu -3'
miRNA:   3'- -GGACCaGGCCu--GGCaac-AGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 58694 0.67 0.957511
Target:  5'- cCCUGGU-CGGACUGguaccUGUUugAGCC-CCa -3'
miRNA:   3'- -GGACCAgGCCUGGCa----ACAG--UUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 60322 0.66 0.973269
Target:  5'- aCCUGacCCGGACCGUggcgagUGUCuACuCugCg -3'
miRNA:   3'- -GGACcaGGCCUGGCA------ACAGuUG-GugG- -5'
28842 5' -54.3 NC_006146.1 + 60424 0.68 0.926291
Target:  5'- aCCUGG-CCGGGgUGgaaUGUCAgACCAUg -3'
miRNA:   3'- -GGACCaGGCCUgGCa--ACAGU-UGGUGg -5'
28842 5' -54.3 NC_006146.1 + 60810 1.14 0.00301
Target:  5'- gCCUGGUCCGGACCGUUGUCAACCACCu -3'
miRNA:   3'- -GGACCAGGCCUGGCAACAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 61947 0.7 0.84701
Target:  5'- cCCUGGUCCacgGGACgGUgcacauuuUCAGCCcCCa -3'
miRNA:   3'- -GGACCAGG---CCUGgCAac------AGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 63289 0.68 0.941038
Target:  5'- cCCUGGcaccUCCGGuauCUGUcccUGUCuGCUGCCc -3'
miRNA:   3'- -GGACC----AGGCCu--GGCA---ACAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 64707 0.66 0.970522
Target:  5'- cCCUGGcaggaggcCCGGGacCCG-UGUCAGCagGCCg -3'
miRNA:   3'- -GGACCa-------GGCCU--GGCaACAGUUGg-UGG- -5'
28842 5' -54.3 NC_006146.1 + 68939 0.67 0.961078
Target:  5'- gCCUGGgcCCaGGagaucuccGCCGUUGUCucaucggucACCGCCc -3'
miRNA:   3'- -GGACCa-GG-CC--------UGGCAACAGu--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 75724 0.67 0.953727
Target:  5'- aCCUGGccaaguaCUGGACCGUgcUCuccgacaucGCCGCCg -3'
miRNA:   3'- -GGACCa------GGCCUGGCAacAGu--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 77954 0.7 0.854779
Target:  5'- uUUGGUCUGGGCCGgaGcCggUgGCCu -3'
miRNA:   3'- gGACCAGGCCUGGCaaCaGuuGgUGG- -5'
28842 5' -54.3 NC_006146.1 + 90837 0.66 0.969659
Target:  5'- gCUGGgaccgcguucgagaUCaCGGcACCGcUGUCuGGCCGCCa -3'
miRNA:   3'- gGACC--------------AG-GCC-UGGCaACAG-UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 97420 0.69 0.883844
Target:  5'- gCCUGGUgCUGGAa----GUUAACCGCCa -3'
miRNA:   3'- -GGACCA-GGCCUggcaaCAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 100911 0.66 0.978199
Target:  5'- gCCguggGGUCCccGACCGUgcUGUUcuuGGCCAUCc -3'
miRNA:   3'- -GGa---CCAGGc-CUGGCA--ACAG---UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 116898 0.71 0.814116
Target:  5'- aCCUGGUgCCGGcccugagggaaaGCCGggGgaucgcaGACCACCc -3'
miRNA:   3'- -GGACCA-GGCC------------UGGCaaCag-----UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 119265 0.66 0.978199
Target:  5'- cCCUGcUCCGGuagucACCGUcccUCAACCucaGCCg -3'
miRNA:   3'- -GGACcAGGCC-----UGGCAac-AGUUGG---UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.