miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 119411 0.69 0.903395
Target:  5'- gCCUGaucaUCCGGuACC--UGUCAcACCACCa -3'
miRNA:   3'- -GGACc---AGGCC-UGGcaACAGU-UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 120578 0.74 0.692323
Target:  5'- gCCUGGUCagagagaacaGGAgCGggGUCuucugGACCACCa -3'
miRNA:   3'- -GGACCAGg---------CCUgGCaaCAG-----UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 122806 0.73 0.702227
Target:  5'- --cGG-CCGaGGCCGcgcUGUCGGCCGCCg -3'
miRNA:   3'- ggaCCaGGC-CUGGCa--ACAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 123503 0.67 0.964432
Target:  5'- gCUGGcCCuGGCCacgGUCGACC-CCa -3'
miRNA:   3'- gGACCaGGcCUGGcaaCAGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 123933 0.66 0.973269
Target:  5'- uCCUGGcggcggCCGGGCCGgcGaaauacgCGGgCACCc -3'
miRNA:   3'- -GGACCa-----GGCCUGGCaaCa------GUUgGUGG- -5'
28842 5' -54.3 NC_006146.1 + 125930 0.66 0.970522
Target:  5'- --gGGUCCGGccACCGcgGUCGAguCCcCCg -3'
miRNA:   3'- ggaCCAGGCC--UGGCaaCAGUU--GGuGG- -5'
28842 5' -54.3 NC_006146.1 + 127177 0.67 0.945494
Target:  5'- aCCUGGcCCGGGCgGagGaaauCCGCCa -3'
miRNA:   3'- -GGACCaGGCCUGgCaaCaguuGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 127406 0.75 0.601985
Target:  5'- gCUGGgccccgccgCCGGAgCCGgUGUCAACgGCCg -3'
miRNA:   3'- gGACCa--------GGCCU-GGCaACAGUUGgUGG- -5'
28842 5' -54.3 NC_006146.1 + 131083 0.72 0.778665
Target:  5'- gCCgaGGccgCCGGGCCGUcaaCGGCCGCCg -3'
miRNA:   3'- -GGa-CCa--GGCCUGGCAacaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135141 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135234 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135327 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135420 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135513 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135606 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135699 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135791 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135884 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135977 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 136070 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.