miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 168622 0.67 0.953727
Target:  5'- gCCUGGcUCCGGugaccucaaaGCCaaacUGUCGGCCAagcCCa -3'
miRNA:   3'- -GGACC-AGGCC----------UGGca--ACAGUUGGU---GG- -5'
28842 5' -54.3 NC_006146.1 + 165960 0.67 0.948058
Target:  5'- cCCUGGUCCccgGGGCacagagcaCGGCCACCc -3'
miRNA:   3'- -GGACCAGG---CCUGgcaaca--GUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 164211 0.7 0.869724
Target:  5'- aUUGGauggaggacuaUCCGGGCCaUUGUU-ACCACCa -3'
miRNA:   3'- gGACC-----------AGGCCUGGcAACAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 157759 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 157681 0.67 0.962445
Target:  5'- aCUGGUCUGGccGCaggccuucaggauggCGUUGUUgAGCCGCUg -3'
miRNA:   3'- gGACCAGGCC--UG---------------GCAACAG-UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 157263 0.68 0.936353
Target:  5'- gCCUGuGUCCGGcGCUugaucGUCAGCC-CCa -3'
miRNA:   3'- -GGAC-CAGGCC-UGGcaa--CAGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 154682 0.67 0.953727
Target:  5'- gCCUGGgagUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGACC---AGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 151604 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 151329 0.71 0.839052
Target:  5'- uCCUcGcgCCGGACCGagagGUCGcCCACCu -3'
miRNA:   3'- -GGAcCa-GGCCUGGCaa--CAGUuGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 148526 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 146854 0.73 0.702227
Target:  5'- gCCUGGcUCgGGGCCGc-GUCAccCCGCCa -3'
miRNA:   3'- -GGACC-AGgCCUGGCaaCAGUu-GGUGG- -5'
28842 5' -54.3 NC_006146.1 + 145448 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 142703 0.68 0.931438
Target:  5'- --cGGUCUGGugCGUUGauguguuuUCGguACCAUCg -3'
miRNA:   3'- ggaCCAGGCCugGCAAC--------AGU--UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 142370 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 139232 0.68 0.936353
Target:  5'- cCCUGGUCCcuGGGCUGUuugccugaggugUGUUuguGACUGCUg -3'
miRNA:   3'- -GGACCAGG--CCUGGCA------------ACAG---UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 137771 0.72 0.750714
Target:  5'- gCUGGUCCGGuCCGggUGggccugguCCGCCg -3'
miRNA:   3'- gGACCAGGCCuGGCa-ACaguu----GGUGG- -5'
28842 5' -54.3 NC_006146.1 + 137557 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 137464 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 137371 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 137278 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.