Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28842 | 5' | -54.3 | NC_006146.1 | + | 137185 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 137092 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136999 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136906 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136813 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136628 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136535 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136442 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136349 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136256 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136163 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136070 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135977 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135884 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135791 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135699 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135606 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135513 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135420 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135327 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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