Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28842 | 5' | -54.3 | NC_006146.1 | + | 135234 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135141 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 131083 | 0.72 | 0.778665 |
Target: 5'- gCCgaGGccgCCGGGCCGUcaaCGGCCGCCg -3' miRNA: 3'- -GGa-CCa--GGCCUGGCAacaGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 127406 | 0.75 | 0.601985 |
Target: 5'- gCUGGgccccgccgCCGGAgCCGgUGUCAACgGCCg -3' miRNA: 3'- gGACCa--------GGCCU-GGCaACAGUUGgUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 127177 | 0.67 | 0.945494 |
Target: 5'- aCCUGGcCCGGGCgGagGaaauCCGCCa -3' miRNA: 3'- -GGACCaGGCCUGgCaaCaguuGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 125930 | 0.66 | 0.970522 |
Target: 5'- --gGGUCCGGccACCGcgGUCGAguCCcCCg -3' miRNA: 3'- ggaCCAGGCC--UGGCaaCAGUU--GGuGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 123933 | 0.66 | 0.973269 |
Target: 5'- uCCUGGcggcggCCGGGCCGgcGaaauacgCGGgCACCc -3' miRNA: 3'- -GGACCa-----GGCCUGGCaaCa------GUUgGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 123503 | 0.67 | 0.964432 |
Target: 5'- gCUGGcCCuGGCCacgGUCGACC-CCa -3' miRNA: 3'- gGACCaGGcCUGGcaaCAGUUGGuGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 122806 | 0.73 | 0.702227 |
Target: 5'- --cGG-CCGaGGCCGcgcUGUCGGCCGCCg -3' miRNA: 3'- ggaCCaGGC-CUGGCa--ACAGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 120578 | 0.74 | 0.692323 |
Target: 5'- gCCUGGUCagagagaacaGGAgCGggGUCuucugGACCACCa -3' miRNA: 3'- -GGACCAGg---------CCUgGCaaCAG-----UUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 119411 | 0.69 | 0.903395 |
Target: 5'- gCCUGaucaUCCGGuACC--UGUCAcACCACCa -3' miRNA: 3'- -GGACc---AGGCC-UGGcaACAGU-UGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 119265 | 0.66 | 0.978199 |
Target: 5'- cCCUGcUCCGGuagucACCGUcccUCAACCucaGCCg -3' miRNA: 3'- -GGACcAGGCC-----UGGCAac-AGUUGG---UGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 116898 | 0.71 | 0.814116 |
Target: 5'- aCCUGGUgCCGGcccugagggaaaGCCGggGgaucgcaGACCACCc -3' miRNA: 3'- -GGACCA-GGCC------------UGGCaaCag-----UUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 100911 | 0.66 | 0.978199 |
Target: 5'- gCCguggGGUCCccGACCGUgcUGUUcuuGGCCAUCc -3' miRNA: 3'- -GGa---CCAGGc-CUGGCA--ACAG---UUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 97420 | 0.69 | 0.883844 |
Target: 5'- gCCUGGUgCUGGAa----GUUAACCGCCa -3' miRNA: 3'- -GGACCA-GGCCUggcaaCAGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 90837 | 0.66 | 0.969659 |
Target: 5'- gCUGGgaccgcguucgagaUCaCGGcACCGcUGUCuGGCCGCCa -3' miRNA: 3'- gGACC--------------AG-GCC-UGGCaACAG-UUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 77954 | 0.7 | 0.854779 |
Target: 5'- uUUGGUCUGGGCCGgaGcCggUgGCCu -3' miRNA: 3'- gGACCAGGCCUGGCaaCaGuuGgUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 75724 | 0.67 | 0.953727 |
Target: 5'- aCCUGGccaaguaCUGGACCGUgcUCuccgacaucGCCGCCg -3' miRNA: 3'- -GGACCa------GGCCUGGCAacAGu--------UGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 68939 | 0.67 | 0.961078 |
Target: 5'- gCCUGGgcCCaGGagaucuccGCCGUUGUCucaucggucACCGCCc -3' miRNA: 3'- -GGACCa-GG-CC--------UGGCAACAGu--------UGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 64707 | 0.66 | 0.970522 |
Target: 5'- cCCUGGcaggaggcCCGGGacCCG-UGUCAGCagGCCg -3' miRNA: 3'- -GGACCa-------GGCCU--GGCaACAGUUGg-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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