miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 120578 0.74 0.692323
Target:  5'- gCCUGGUCagagagaacaGGAgCGggGUCuucugGACCACCa -3'
miRNA:   3'- -GGACCAGg---------CCUgGCaaCAG-----UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 139232 0.68 0.936353
Target:  5'- cCCUGGUCCcuGGGCUGUuugccugaggugUGUUuguGACUGCUg -3'
miRNA:   3'- -GGACCAGG--CCUGGCA------------ACAG---UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 127177 0.67 0.945494
Target:  5'- aCCUGGcCCGGGCgGagGaaauCCGCCa -3'
miRNA:   3'- -GGACCaGGCCUGgCaaCaguuGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 100911 0.66 0.978199
Target:  5'- gCCguggGGUCCccGACCGUgcUGUUcuuGGCCAUCc -3'
miRNA:   3'- -GGa---CCAGGc-CUGGCA--ACAG---UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 151329 0.71 0.839052
Target:  5'- uCCUcGcgCCGGACCGagagGUCGcCCACCu -3'
miRNA:   3'- -GGAcCa-GGCCUGGCaa--CAGUuGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 164211 0.7 0.869724
Target:  5'- aUUGGauggaggacuaUCCGGGCCaUUGUU-ACCACCa -3'
miRNA:   3'- gGACC-----------AGGCCUGGcAACAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 97420 0.69 0.883844
Target:  5'- gCCUGGUgCUGGAa----GUUAACCGCCa -3'
miRNA:   3'- -GGACCA-GGCCUggcaaCAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 49475 0.69 0.8971
Target:  5'- -aUGGUgaGGGCCGcggUGUCGGCCAg- -3'
miRNA:   3'- ggACCAggCCUGGCa--ACAGUUGGUgg -5'
28842 5' -54.3 NC_006146.1 + 119411 0.69 0.903395
Target:  5'- gCCUGaucaUCCGGuACC--UGUCAcACCACCa -3'
miRNA:   3'- -GGACc---AGGCC-UGGcaACAGU-UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 33330 0.68 0.936353
Target:  5'- uCCggGGUCCGGGugcuCCGggG-CAgccgggugGCCGCCg -3'
miRNA:   3'- -GGa-CCAGGCCU----GGCaaCaGU--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 55042 0.68 0.926291
Target:  5'- --gGGUCgGGGCCGggGcCuGCCACa -3'
miRNA:   3'- ggaCCAGgCCUGGCaaCaGuUGGUGg -5'
28842 5' -54.3 NC_006146.1 + 58152 0.69 0.903395
Target:  5'- gCCUGG-CCGGcuuCUGcgccUCGACCACCu -3'
miRNA:   3'- -GGACCaGGCCu--GGCaac-AGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 146854 0.73 0.702227
Target:  5'- gCCUGGcUCgGGGCCGc-GUCAccCCGCCa -3'
miRNA:   3'- -GGACC-AGgCCUGGCaaCAGUu-GGUGG- -5'
28842 5' -54.3 NC_006146.1 + 57241 0.68 0.931438
Target:  5'- -gUGGUCCacGGGcCCGUgGUCAGCaagGCCa -3'
miRNA:   3'- ggACCAGG--CCU-GGCAaCAGUUGg--UGG- -5'
28842 5' -54.3 NC_006146.1 + 137771 0.72 0.750714
Target:  5'- gCUGGUCCGGuCCGggUGggccugguCCGCCg -3'
miRNA:   3'- gGACCAGGCCuGGCa-ACaguu----GGUGG- -5'
28842 5' -54.3 NC_006146.1 + 57127 0.69 0.8971
Target:  5'- -aUGGUCCcuaauuucgggGGGCUGgugGcCGACCGCCg -3'
miRNA:   3'- ggACCAGG-----------CCUGGCaa-CaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 142703 0.68 0.931438
Target:  5'- --cGGUCUGGugCGUUGauguguuuUCGguACCAUCg -3'
miRNA:   3'- ggaCCAGGCCugGCAAC--------AGU--UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 157263 0.68 0.936353
Target:  5'- gCCUGuGUCCGGcGCUugaucGUCAGCC-CCa -3'
miRNA:   3'- -GGAC-CAGGCC-UGGcaa--CAGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 131083 0.72 0.778665
Target:  5'- gCCgaGGccgCCGGGCCGUcaaCGGCCGCCg -3'
miRNA:   3'- -GGa-CCa--GGCCUGGCAacaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 56082 0.7 0.87689
Target:  5'- -----aCCGGGCCaaguaggUGUCGGCCACCa -3'
miRNA:   3'- ggaccaGGCCUGGca-----ACAGUUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.