miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 45228 0.67 0.961078
Target:  5'- cUCUGGaaCCGGACggaggcuggggUGUUGUCGGCCGa- -3'
miRNA:   3'- -GGACCa-GGCCUG-----------GCAACAGUUGGUgg -5'
28842 5' -54.3 NC_006146.1 + 58694 0.67 0.957511
Target:  5'- cCCUGGU-CGGACUGguaccUGUUugAGCC-CCa -3'
miRNA:   3'- -GGACCAgGCCUGGCa----ACAG--UUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 57241 0.68 0.931438
Target:  5'- -gUGGUCCacGGGcCCGUgGUCAGCaagGCCa -3'
miRNA:   3'- ggACCAGG--CCU-GGCAaCAGUUGg--UGG- -5'
28842 5' -54.3 NC_006146.1 + 97420 0.69 0.883844
Target:  5'- gCCUGGUgCUGGAa----GUUAACCGCCa -3'
miRNA:   3'- -GGACCA-GGCCUggcaaCAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135977 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135327 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 127177 0.67 0.945494
Target:  5'- aCCUGGcCCGGGCgGagGaaauCCGCCa -3'
miRNA:   3'- -GGACCaGGCCUGgCaaCaguuGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 56082 0.7 0.87689
Target:  5'- -----aCCGGGCCaaguaggUGUCGGCCACCa -3'
miRNA:   3'- ggaccaGGCCUGGca-----ACAGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135234 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 164211 0.7 0.869724
Target:  5'- aUUGGauggaggacuaUCCGGGCCaUUGUU-ACCACCa -3'
miRNA:   3'- gGACC-----------AGGCCUGGcAACAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 49250 0.67 0.957511
Target:  5'- uCCgGGUCCaGGGCCGg---UAGCCcCCu -3'
miRNA:   3'- -GGaCCAGG-CCUGGCaacaGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 68939 0.67 0.961078
Target:  5'- gCCUGGgcCCaGGagaucuccGCCGUUGUCucaucggucACCGCCc -3'
miRNA:   3'- -GGACCa-GG-CC--------UGGCAACAGu--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 157263 0.68 0.936353
Target:  5'- gCCUGuGUCCGGcGCUugaucGUCAGCC-CCa -3'
miRNA:   3'- -GGAC-CAGGCC-UGGcaa--CAGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 142703 0.68 0.931438
Target:  5'- --cGGUCUGGugCGUUGauguguuuUCGguACCAUCg -3'
miRNA:   3'- ggaCCAGGCCugGCAAC--------AGU--UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 119411 0.69 0.903395
Target:  5'- gCCUGaucaUCCGGuACC--UGUCAcACCACCa -3'
miRNA:   3'- -GGACc---AGGCC-UGGcaACAGU-UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 49475 0.69 0.8971
Target:  5'- -aUGGUgaGGGCCGcggUGUCGGCCAg- -3'
miRNA:   3'- ggACCAggCCUGGCa--ACAGUUGGUgg -5'
28842 5' -54.3 NC_006146.1 + 136349 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 136070 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135699 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 135420 0.66 0.967578
Target:  5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3'
miRNA:   3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.