Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28842 | 5' | -54.3 | NC_006146.1 | + | 135234 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 137185 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135141 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 135699 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136070 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 52449 | 0.66 | 0.973269 |
Target: 5'- aCUGGgCCaccCCGUUG-UAGCCGCCg -3' miRNA: 3'- gGACCaGGccuGGCAACaGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 137464 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 100911 | 0.66 | 0.978199 |
Target: 5'- gCCguggGGUCCccGACCGUgcUGUUcuuGGCCAUCc -3' miRNA: 3'- -GGa---CCAGGc-CUGGCA--ACAG---UUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 137092 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136999 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136813 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136628 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 136349 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 137557 | 0.66 | 0.967578 |
Target: 5'- -gUGG-CCGGGCCGcugccggGUCcGCUGCCc -3' miRNA: 3'- ggACCaGGCCUGGCaa-----CAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 60424 | 0.68 | 0.926291 |
Target: 5'- aCCUGG-CCGGGgUGgaaUGUCAgACCAUg -3' miRNA: 3'- -GGACCaGGCCUgGCa--ACAGU-UGGUGg -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 77954 | 0.7 | 0.854779 |
Target: 5'- uUUGGUCUGGGCCGgaGcCggUgGCCu -3' miRNA: 3'- gGACCAGGCCUGGCaaCaGuuGgUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 64707 | 0.66 | 0.970522 |
Target: 5'- cCCUGGcaggaggcCCGGGacCCG-UGUCAGCagGCCg -3' miRNA: 3'- -GGACCa-------GGCCU--GGCaACAGUUGg-UGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 54456 | 0.71 | 0.839052 |
Target: 5'- gCUGG-CCuacaauGGGCCGguuuUCAGCCACCa -3' miRNA: 3'- gGACCaGG------CCUGGCaac-AGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 142370 | 0.67 | 0.964432 |
Target: 5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3' miRNA: 3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 56766 | 0.67 | 0.964432 |
Target: 5'- gCCUGGUCCGGAgCCucaucCGACaugaaCACCa -3' miRNA: 3'- -GGACCAGGCCU-GGcaacaGUUG-----GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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