Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28842 | 5' | -54.3 | NC_006146.1 | + | 55146 | 0.67 | 0.964432 |
Target: 5'- ----aUCgGGACCcccaaUGUCAGCCGCCg -3' miRNA: 3'- ggaccAGgCCUGGca---ACAGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 64707 | 0.66 | 0.970522 |
Target: 5'- cCCUGGcaggaggcCCGGGacCCG-UGUCAGCagGCCg -3' miRNA: 3'- -GGACCa-------GGCCU--GGCaACAGUUGg-UGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 45685 | 0.66 | 0.970522 |
Target: 5'- cCCUGGauugCUGGAUCcugcaCGACCGCCa -3' miRNA: 3'- -GGACCa---GGCCUGGcaacaGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 60322 | 0.66 | 0.973269 |
Target: 5'- aCCUGacCCGGACCGUggcgagUGUCuACuCugCg -3' miRNA: 3'- -GGACcaGGCCUGGCA------ACAGuUG-GugG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 125930 | 0.66 | 0.970522 |
Target: 5'- --gGGUCCGGccACCGcgGUCGAguCCcCCg -3' miRNA: 3'- ggaCCAGGCC--UGGCaaCAGUU--GGuGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 75724 | 0.67 | 0.953727 |
Target: 5'- aCCUGGccaaguaCUGGACCGUgcUCuccgacaucGCCGCCg -3' miRNA: 3'- -GGACCa------GGCCUGGCAacAGu--------UGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 43514 | 0.77 | 0.503716 |
Target: 5'- --gGGUCCGGGCCaggcUGcCGGCCACCa -3' miRNA: 3'- ggaCCAGGCCUGGca--ACaGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 61947 | 0.7 | 0.84701 |
Target: 5'- cCCUGGUCCacgGGACgGUgcacauuuUCAGCCcCCa -3' miRNA: 3'- -GGACCAGG---CCUGgCAac------AGUUGGuGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 54456 | 0.71 | 0.839052 |
Target: 5'- gCUGG-CCuacaauGGGCCGguuuUCAGCCACCa -3' miRNA: 3'- gGACCaGG------CCUGGCaac-AGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 77954 | 0.7 | 0.854779 |
Target: 5'- uUUGGUCUGGGCCGgaGcCggUgGCCu -3' miRNA: 3'- gGACCAGGCCUGGCaaCaGuuGgUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 60424 | 0.68 | 0.926291 |
Target: 5'- aCCUGG-CCGGGgUGgaaUGUCAgACCAUg -3' miRNA: 3'- -GGACCaGGCCUgGCa--ACAGU-UGGUGg -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 52633 | 0.68 | 0.928377 |
Target: 5'- uCCUGGaCCGGGCCGagaacaugggcUcuggcccccaguacgUGcgCAGCCGCCu -3' miRNA: 3'- -GGACCaGGCCUGGC-----------A---------------ACa-GUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 18379 | 0.68 | 0.936353 |
Target: 5'- cCCUGGUCCuGGugGCCGggGUgGugauccuagucAUCACCc -3' miRNA: 3'- -GGACCAGG-CC--UGGCaaCAgU-----------UGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 57229 | 0.68 | 0.936832 |
Target: 5'- gCCgGGcCCGGGCCcgagccaccucucGUCGACCAUCa -3' miRNA: 3'- -GGaCCaGGCCUGGcaa----------CAGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 63289 | 0.68 | 0.941038 |
Target: 5'- cCCUGGcaccUCCGGuauCUGUcccUGUCuGCUGCCc -3' miRNA: 3'- -GGACC----AGGCCu--GGCA---ACAGuUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 13317 | 0.67 | 0.945494 |
Target: 5'- gCUGGgcaCCaGGGCgGUggaGUCGGCCGCg -3' miRNA: 3'- gGACCa--GG-CCUGgCAa--CAGUUGGUGg -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 23738 | 0.67 | 0.945494 |
Target: 5'- gCC-GGUCUGcGCCGccgccggGUCAACUGCCg -3' miRNA: 3'- -GGaCCAGGCcUGGCaa-----CAGUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 165960 | 0.67 | 0.948058 |
Target: 5'- cCCUGGUCCccgGGGCacagagcaCGGCCACCc -3' miRNA: 3'- -GGACCAGG---CCUGgcaaca--GUUGGUGG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 154682 | 0.67 | 0.953727 |
Target: 5'- gCCUGGgagUCCGGGgUGUUG--AGCCugCu -3' miRNA: 3'- -GGACC---AGGCCUgGCAACagUUGGugG- -5' |
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28842 | 5' | -54.3 | NC_006146.1 | + | 20242 | 0.67 | 0.953727 |
Target: 5'- cCCUGGUCaUGGAUC--UGcUCAACCAUUu -3' miRNA: 3'- -GGACCAG-GCCUGGcaAC-AGUUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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