miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28842 5' -54.3 NC_006146.1 + 165960 0.67 0.948058
Target:  5'- cCCUGGUCCccgGGGCacagagcaCGGCCACCc -3'
miRNA:   3'- -GGACCAGG---CCUGgcaaca--GUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 145448 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 142370 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 56766 0.67 0.964432
Target:  5'- gCCUGGUCCGGAgCCucaucCGACaugaaCACCa -3'
miRNA:   3'- -GGACCAGGCCU-GGcaacaGUUG-----GUGG- -5'
28842 5' -54.3 NC_006146.1 + 123503 0.67 0.964432
Target:  5'- gCUGGcCCuGGCCacgGUCGACC-CCa -3'
miRNA:   3'- gGACCaGGcCUGGcaaCAGUUGGuGG- -5'
28842 5' -54.3 NC_006146.1 + 168622 0.67 0.953727
Target:  5'- gCCUGGcUCCGGugaccucaaaGCCaaacUGUCGGCCAagcCCa -3'
miRNA:   3'- -GGACC-AGGCC----------UGGca--ACAGUUGGU---GG- -5'
28842 5' -54.3 NC_006146.1 + 75724 0.67 0.953727
Target:  5'- aCCUGGccaaguaCUGGACCGUgcUCuccgacaucGCCGCCg -3'
miRNA:   3'- -GGACCa------GGCCUGGCAacAGu--------UGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 20242 0.67 0.953727
Target:  5'- cCCUGGUCaUGGAUC--UGcUCAACCAUUu -3'
miRNA:   3'- -GGACCAG-GCCUGGcaAC-AGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 154682 0.67 0.953727
Target:  5'- gCCUGGgagUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGACC---AGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 148526 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 151604 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 157759 0.67 0.964432
Target:  5'- gCCUgggaGGUCCGGGgUGUUG--AGCCugCu -3'
miRNA:   3'- -GGA----CCAGGCCUgGCAACagUUGGugG- -5'
28842 5' -54.3 NC_006146.1 + 48996 0.66 0.975825
Target:  5'- aCCUGGgaggCUGGGgCGUUGccCAGCUuggggACCu -3'
miRNA:   3'- -GGACCa---GGCCUgGCAACa-GUUGG-----UGG- -5'
28842 5' -54.3 NC_006146.1 + 60322 0.66 0.973269
Target:  5'- aCCUGacCCGGACCGUggcgagUGUCuACuCugCg -3'
miRNA:   3'- -GGACcaGGCCUGGCA------ACAGuUG-GugG- -5'
28842 5' -54.3 NC_006146.1 + 123933 0.66 0.973269
Target:  5'- uCCUGGcggcggCCGGGCCGgcGaaauacgCGGgCACCc -3'
miRNA:   3'- -GGACCa-----GGCCUGGCaaCa------GUUgGUGG- -5'
28842 5' -54.3 NC_006146.1 + 45685 0.66 0.970522
Target:  5'- cCCUGGauugCUGGAUCcugcaCGACCGCCa -3'
miRNA:   3'- -GGACCa---GGCCUGGcaacaGUUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 125930 0.66 0.970522
Target:  5'- --gGGUCCGGccACCGcgGUCGAguCCcCCg -3'
miRNA:   3'- ggaCCAGGCC--UGGCaaCAGUU--GGuGG- -5'
28842 5' -54.3 NC_006146.1 + 64707 0.66 0.970522
Target:  5'- cCCUGGcaggaggcCCGGGacCCG-UGUCAGCagGCCg -3'
miRNA:   3'- -GGACCa-------GGCCU--GGCaACAGUUGg-UGG- -5'
28842 5' -54.3 NC_006146.1 + 90837 0.66 0.969659
Target:  5'- gCUGGgaccgcguucgagaUCaCGGcACCGcUGUCuGGCCGCCa -3'
miRNA:   3'- gGACC--------------AG-GCC-UGGCaACAG-UUGGUGG- -5'
28842 5' -54.3 NC_006146.1 + 55146 0.67 0.964432
Target:  5'- ----aUCgGGACCcccaaUGUCAGCCGCCg -3'
miRNA:   3'- ggaccAGgCCUGGca---ACAGUUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.