miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 125920 0.66 0.904482
Target:  5'- cUGCGCCUcCGUCG--GCgCACGAGGu -3'
miRNA:   3'- -ACGUGGGaGUAGCucUGgGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 157499 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 17825 0.66 0.898285
Target:  5'- cGCGCCCccugguguccuUCAgcuucaucaaCGAcaccaaGACCUACGAGGGc -3'
miRNA:   3'- aCGUGGG-----------AGUa---------GCU------CUGGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 19620 0.66 0.898285
Target:  5'- gGCccugGCCUUCGauaUCGAGugUCugGGGGa -3'
miRNA:   3'- aCG----UGGGAGU---AGCUCugGGugCUCCc -5'
28843 3' -57.3 NC_006146.1 + 25830 0.66 0.898285
Target:  5'- gGCACCCUCAUgagGAGAuacaUCCAgCGccAGGGc -3'
miRNA:   3'- aCGUGGGAGUAg--CUCU----GGGU-GC--UCCC- -5'
28843 3' -57.3 NC_006146.1 + 142109 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 145187 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 148265 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 151343 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 154421 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 3880 0.66 0.898285
Target:  5'- aGCugCugguCUCggCGAGGCCCaccgACGAGGc -3'
miRNA:   3'- aCGugG----GAGuaGCUCUGGG----UGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 73581 0.66 0.897653
Target:  5'- cGcCAUCCUCuccuccgGUCGAG-CUCACGGGGc -3'
miRNA:   3'- aC-GUGGGAG-------UAGCUCuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 167310 0.66 0.891868
Target:  5'- gGCGCCUgCAgggGGGGCCgGCGGGGc -3'
miRNA:   3'- aCGUGGGaGUag-CUCUGGgUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 67463 0.66 0.891868
Target:  5'- gUGCGCaugugCUCcgCGAaGCCCcgguccaggaGCGAGGGg -3'
miRNA:   3'- -ACGUGg----GAGuaGCUcUGGG----------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 169174 0.66 0.891868
Target:  5'- gGCGCCUgCAgggGGGGCCgGCGGGGc -3'
miRNA:   3'- aCGUGGGaGUag-CUCUGGgUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 95105 0.66 0.891868
Target:  5'- cUGgGCCUg-AUCGAGACCCugGAa-- -3'
miRNA:   3'- -ACgUGGGagUAGCUCUGGGugCUccc -5'
28843 3' -57.3 NC_006146.1 + 168242 0.66 0.891868
Target:  5'- gGCGCCUgCAgggGGGGCCgGCGGGGc -3'
miRNA:   3'- aCGUGGGaGUag-CUCUGGgUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 61253 0.66 0.891214
Target:  5'- cUGUcagACCCUCuucagcgAUCGGGcugguCUCACGGGGGc -3'
miRNA:   3'- -ACG---UGGGAG-------UAGCUCu----GGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 40375 0.66 0.891214
Target:  5'- gGCcCCCUgGUCGccgcccggcgcguAGuagccuCCCGCGGGGGc -3'
miRNA:   3'- aCGuGGGAgUAGC-------------UCu-----GGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 162561 0.66 0.885234
Target:  5'- aGCACCC-CAggGAGuacuuGCgCCACgGAGGGu -3'
miRNA:   3'- aCGUGGGaGUagCUC-----UG-GGUG-CUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.