Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 125920 | 0.66 | 0.904482 |
Target: 5'- cUGCGCCUcCGUCG--GCgCACGAGGu -3' miRNA: 3'- -ACGUGGGaGUAGCucUGgGUGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 61253 | 0.66 | 0.891214 |
Target: 5'- cUGUcagACCCUCuucagcgAUCGGGcugguCUCACGGGGGc -3' miRNA: 3'- -ACG---UGGGAG-------UAGCUCu----GGGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 24269 | 0.66 | 0.885234 |
Target: 5'- aUGgACCCaggCcUCGuGACCCugGccGGGGg -3' miRNA: 3'- -ACgUGGGa--GuAGCuCUGGGugC--UCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 162561 | 0.66 | 0.885234 |
Target: 5'- aGCACCC-CAggGAGuacuuGCgCCACgGAGGGu -3' miRNA: 3'- aCGUGGGaGUagCUC-----UG-GGUG-CUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 115624 | 0.66 | 0.885234 |
Target: 5'- cUGCugCC-CAccgCGAGcCCCACGAGc- -3' miRNA: 3'- -ACGugGGaGUa--GCUCuGGGUGCUCcc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 39833 | 0.66 | 0.885234 |
Target: 5'- gGCGgCCUCGgcCGcacaguGGGCCgGCGGGGGc -3' miRNA: 3'- aCGUgGGAGUa-GC------UCUGGgUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 157003 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 153925 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 150847 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 40375 | 0.66 | 0.891214 |
Target: 5'- gGCcCCCUgGUCGccgcccggcgcguAGuagccuCCCGCGGGGGc -3' miRNA: 3'- aCGuGGGAgUAGC-------------UCu-----GGGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 95105 | 0.66 | 0.891868 |
Target: 5'- cUGgGCCUg-AUCGAGACCCugGAa-- -3' miRNA: 3'- -ACgUGGGagUAGCUCUGGGugCUccc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 73581 | 0.66 | 0.897653 |
Target: 5'- cGcCAUCCUCuccuccgGUCGAG-CUCACGGGGc -3' miRNA: 3'- aC-GUGGGAG-------UAGCUCuGGGUGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 154421 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 151343 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 148265 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 145187 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 142109 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 25830 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUCAUgagGAGAuacaUCCAgCGccAGGGc -3' miRNA: 3'- aCGUGGGAGUAg--CUCU----GGGU-GC--UCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 19620 | 0.66 | 0.898285 |
Target: 5'- gGCccugGCCUUCGauaUCGAGugUCugGGGGa -3' miRNA: 3'- aCG----UGGGAGU---AGCUCugGGugCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 17825 | 0.66 | 0.898285 |
Target: 5'- cGCGCCCccugguguccuUCAgcuucaucaaCGAcaccaaGACCUACGAGGGc -3' miRNA: 3'- aCGUGGG-----------AGUa---------GCU------CUGGGUGCUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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