miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 19620 0.66 0.898285
Target:  5'- gGCccugGCCUUCGauaUCGAGugUCugGGGGa -3'
miRNA:   3'- aCG----UGGGAGU---AGCUCugGGugCUCCc -5'
28843 3' -57.3 NC_006146.1 + 148265 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 151343 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 154421 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 157499 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 17825 0.66 0.898285
Target:  5'- cGCGCCCccugguguccuUCAgcuucaucaaCGAcaccaaGACCUACGAGGGc -3'
miRNA:   3'- aCGUGGG-----------AGUa---------GCU------CUGGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 73581 0.66 0.897653
Target:  5'- cGcCAUCCUCuccuccgGUCGAG-CUCACGGGGc -3'
miRNA:   3'- aC-GUGGGAG-------UAGCUCuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 95105 0.66 0.891868
Target:  5'- cUGgGCCUg-AUCGAGACCCugGAa-- -3'
miRNA:   3'- -ACgUGGGagUAGCUCUGGGugCUccc -5'
28843 3' -57.3 NC_006146.1 + 40375 0.66 0.891214
Target:  5'- gGCcCCCUgGUCGccgcccggcgcguAGuagccuCCCGCGGGGGc -3'
miRNA:   3'- aCGuGGGAgUAGC-------------UCu-----GGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 61253 0.66 0.891214
Target:  5'- cUGUcagACCCUCuucagcgAUCGGGcugguCUCACGGGGGc -3'
miRNA:   3'- -ACG---UGGGAG-------UAGCUCu----GGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 24269 0.66 0.885234
Target:  5'- aUGgACCCaggCcUCGuGACCCugGccGGGGg -3'
miRNA:   3'- -ACgUGGGa--GuAGCuCUGGGugC--UCCC- -5'
28843 3' -57.3 NC_006146.1 + 162561 0.66 0.885234
Target:  5'- aGCACCC-CAggGAGuacuuGCgCCACgGAGGGu -3'
miRNA:   3'- aCGUGGGaGUagCUC-----UG-GGUG-CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 67355 0.67 0.871331
Target:  5'- -cCAUCCUCGgggucCGGGuCCCACGAguacGGGg -3'
miRNA:   3'- acGUGGGAGUa----GCUCuGGGUGCU----CCC- -5'
28843 3' -57.3 NC_006146.1 + 55066 0.67 0.856613
Target:  5'- gGCGgCCgUAUCG-GACCCACaGcAGGGa -3'
miRNA:   3'- aCGUgGGaGUAGCuCUGGGUG-C-UCCC- -5'
28843 3' -57.3 NC_006146.1 + 44412 0.67 0.848962
Target:  5'- gGCGCCUUCcUCGAGggGCUCcCGGGGu -3'
miRNA:   3'- aCGUGGGAGuAGCUC--UGGGuGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 47716 0.67 0.841123
Target:  5'- gUGCucgGCCCUCGagaUUGGGGaggUCUugGAGGGg -3'
miRNA:   3'- -ACG---UGGGAGU---AGCUCU---GGGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 13113 0.67 0.85962
Target:  5'- --gGCCCUguUUGuggacgggggcucccGGGCCCACGAGGa -3'
miRNA:   3'- acgUGGGAguAGC---------------UCUGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 124483 0.67 0.870615
Target:  5'- gGCcCCCUCGuucuacgcgggacUCGGccuggucucGGCCCugGCGAGGGa -3'
miRNA:   3'- aCGuGGGAGU-------------AGCU---------CUGGG--UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 76360 0.67 0.871331
Target:  5'- cGcCACCCUCA---AGACCgcCACGAGaGGg -3'
miRNA:   3'- aC-GUGGGAGUagcUCUGG--GUGCUC-CC- -5'
28843 3' -57.3 NC_006146.1 + 108980 0.67 0.871331
Target:  5'- cGUgaaGgCCUCGgaGGGACCCACGcucAGGGg -3'
miRNA:   3'- aCG---UgGGAGUagCUCUGGGUGC---UCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.