Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 47716 | 0.67 | 0.841123 |
Target: 5'- gUGCucgGCCCUCGagaUUGGGGaggUCUugGAGGGg -3' miRNA: 3'- -ACG---UGGGAGU---AGCUCU---GGGugCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 13113 | 0.67 | 0.85962 |
Target: 5'- --gGCCCUguUUGuggacgggggcucccGGGCCCACGAGGa -3' miRNA: 3'- acgUGGGAguAGC---------------UCUGGGUGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 55066 | 0.67 | 0.856613 |
Target: 5'- gGCGgCCgUAUCG-GACCCACaGcAGGGa -3' miRNA: 3'- aCGUgGGaGUAGCuCUGGGUG-C-UCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 124483 | 0.67 | 0.870615 |
Target: 5'- gGCcCCCUCGuucuacgcgggacUCGGccuggucucGGCCCugGCGAGGGa -3' miRNA: 3'- aCGuGGGAGU-------------AGCU---------CUGGG--UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 76360 | 0.67 | 0.871331 |
Target: 5'- cGcCACCCUCA---AGACCgcCACGAGaGGg -3' miRNA: 3'- aC-GUGGGAGUagcUCUGG--GUGCUC-CC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 170687 | 0.68 | 0.799361 |
Target: 5'- gGCGCCC-CG--GGGACCguCGCGGGGGc -3' miRNA: 3'- aCGUGGGaGUagCUCUGG--GUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 109036 | 0.68 | 0.816551 |
Target: 5'- cGCGCCCcCGUgGAGACCUcuGCcccGGGa -3' miRNA: 3'- aCGUGGGaGUAgCUCUGGG--UGcu-CCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 102992 | 0.68 | 0.824911 |
Target: 5'- aGCACCUUCGgcu---CCCACGAGGc -3' miRNA: 3'- aCGUGGGAGUagcucuGGGUGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 102584 | 0.68 | 0.824911 |
Target: 5'- cGcCAUCCUC-UCGcGGCCCGagGAGGGc -3' miRNA: 3'- aC-GUGGGAGuAGCuCUGGGUg-CUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 141929 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 114768 | 0.68 | 0.816551 |
Target: 5'- aGgGCUCUCGgucUCGGGGCCCGCGGc-- -3' miRNA: 3'- aCgUGGGAGU---AGCUCUGGGUGCUccc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 125822 | 0.68 | 0.80631 |
Target: 5'- gGCACCCUCccucuc-CCCACGAGGc -3' miRNA: 3'- aCGUGGGAGuagcucuGGGUGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 52430 | 0.68 | 0.799361 |
Target: 5'- gGCcucuGCCCUCcaguuugggGUCGAcGCCCugGAGaGGg -3' miRNA: 3'- aCG----UGGGAG---------UAGCUcUGGGugCUC-CC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 157319 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 154241 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 145007 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 148085 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 151163 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 94536 | 0.69 | 0.772518 |
Target: 5'- cGCGCCCUC-UCGuGGCggUCuuGAGGGu -3' miRNA: 3'- aCGUGGGAGuAGCuCUG--GGugCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 140612 | 0.69 | 0.763321 |
Target: 5'- aGCACCag---CGAaGCCCAgGAGGGg -3' miRNA: 3'- aCGUGGgaguaGCUcUGGGUgCUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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