Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 162388 | 0.7 | 0.706113 |
Target: 5'- cGCGCCCgCGccCGGGACCC-CGGuGGGc -3' miRNA: 3'- aCGUGGGaGUa-GCUCUGGGuGCU-CCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 94536 | 0.69 | 0.772518 |
Target: 5'- cGCGCCCUC-UCGuGGCggUCuuGAGGGu -3' miRNA: 3'- aCGUGGGAGuAGCuCUG--GGugCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 47559 | 0.69 | 0.7351 |
Target: 5'- aGCuCCCUCggCGAGACCCcUGAcGGc -3' miRNA: 3'- aCGuGGGAGuaGCUCUGGGuGCUcCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 144692 | 0.69 | 0.771604 |
Target: 5'- gGCGCCCUUgccuggaggCGAGACugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGua-------GCUCUG-------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 129838 | 0.69 | 0.767014 |
Target: 5'- gGCcuCCCUCcacccCGAGGCCCccagggccgccgcggACGGGGGg -3' miRNA: 3'- aCGu-GGGAGua---GCUCUGGG---------------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 140612 | 0.69 | 0.763321 |
Target: 5'- aGCACCag---CGAaGCCCAgGAGGGg -3' miRNA: 3'- aCGUGGgaguaGCUcUGGGUgCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 109179 | 0.69 | 0.754014 |
Target: 5'- --gGCCCUUAgucUGAGGCCCAgacaGAGGGc -3' miRNA: 3'- acgUGGGAGUa--GCUCUGGGUg---CUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 136753 | 0.69 | 0.725511 |
Target: 5'- -cCACCCUCGcCGGGGCuCCGgGAGGc -3' miRNA: 3'- acGUGGGAGUaGCUCUG-GGUgCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 76738 | 0.69 | 0.763321 |
Target: 5'- cGaCAgCUUCGUgGAGGCCCACGGGc- -3' miRNA: 3'- aC-GUgGGAGUAgCUCUGGGUGCUCcc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 141929 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 145007 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 148085 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 151163 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 154241 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 157319 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 52430 | 0.68 | 0.799361 |
Target: 5'- gGCcucuGCCCUCcaguuugggGUCGAcGCCCugGAGaGGg -3' miRNA: 3'- aCG----UGGGAG---------UAGCUcUGGGugCUC-CC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 125822 | 0.68 | 0.80631 |
Target: 5'- gGCACCCUCccucuc-CCCACGAGGc -3' miRNA: 3'- aCGUGGGAGuagcucuGGGUGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 114768 | 0.68 | 0.816551 |
Target: 5'- aGgGCUCUCGgucUCGGGGCCCGCGGc-- -3' miRNA: 3'- aCgUGGGAGU---AGCUCUGGGUGCUccc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 102992 | 0.68 | 0.824911 |
Target: 5'- aGCACCUUCGgcu---CCCACGAGGc -3' miRNA: 3'- aCGUGGGAGUagcucuGGGUGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 102584 | 0.68 | 0.824911 |
Target: 5'- cGcCAUCCUC-UCGcGGCCCGagGAGGGc -3' miRNA: 3'- aC-GUGGGAGuAGCuCUGGGUg-CUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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