miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 60658 1.11 0.002026
Target:  5'- gUGCACCCUCAUCGAGACCCACGAGGGg -3'
miRNA:   3'- -ACGUGGGAGUAGCUCUGGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 3164 0.78 0.305891
Target:  5'- cUGCGCCCUgAUCGAGcACCUGCGAucucugguucagaaaGGGg -3'
miRNA:   3'- -ACGUGGGAgUAGCUC-UGGGUGCU---------------CCC- -5'
28843 3' -57.3 NC_006146.1 + 99367 0.73 0.499764
Target:  5'- gGCGCCCgggccgcgCGUUGAGGCCCAgGAGcGa -3'
miRNA:   3'- aCGUGGGa-------GUAGCUCUGGGUgCUC-Cc -5'
28843 3' -57.3 NC_006146.1 + 55427 0.73 0.509204
Target:  5'- cGCGgCCUCGUUGAGACCCGcCGAc-- -3'
miRNA:   3'- aCGUgGGAGUAGCUCUGGGU-GCUccc -5'
28843 3' -57.3 NC_006146.1 + 104199 0.73 0.537949
Target:  5'- cUGCGCCCcCA-CGGGGCCgCAagcCGAGGGu -3'
miRNA:   3'- -ACGUGGGaGUaGCUCUGG-GU---GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 50025 0.73 0.547658
Target:  5'- aUGCAgCCgggGUCGAGGCgCAgGAGGGa -3'
miRNA:   3'- -ACGUgGGag-UAGCUCUGgGUgCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 101641 0.72 0.55742
Target:  5'- cUGCAUCUUCGagGAGgacccggaccugGCCCugGGGGGa -3'
miRNA:   3'- -ACGUGGGAGUagCUC------------UGGGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 106471 0.72 0.564284
Target:  5'- gGCugUCUCGgcgcCGAGACCCcaaguaucaugugcACGGGGGc -3'
miRNA:   3'- aCGugGGAGUa---GCUCUGGG--------------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 144030 0.71 0.616818
Target:  5'- gGCGCUCuucuUCAcUGGGAUCUGCGAGGGg -3'
miRNA:   3'- aCGUGGG----AGUaGCUCUGGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 96431 0.71 0.636776
Target:  5'- aGCGCCgCUCAaggccaUCGuGGgCCAUGGGGGc -3'
miRNA:   3'- aCGUGG-GAGU------AGCuCUgGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 126144 0.71 0.650742
Target:  5'- gGCACCCUCuccccCGAGAgCCCGauuggagccaucaaGGGGGg -3'
miRNA:   3'- aCGUGGGAGua---GCUCU-GGGUg-------------CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 60949 0.71 0.666668
Target:  5'- --uGCUUUCAUUGAGGCCCGggggUGGGGGg -3'
miRNA:   3'- acgUGGGAGUAGCUCUGGGU----GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 150717 0.7 0.676589
Target:  5'- cUGCGCCCcCG--GGGGCCCucugcaaagagGCGAGGGa -3'
miRNA:   3'- -ACGUGGGaGUagCUCUGGG-----------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 71851 0.7 0.676589
Target:  5'- gGCACCCcgaCAccCGccGGGCCCugGGGGGc -3'
miRNA:   3'- aCGUGGGa--GUa-GC--UCUGGGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 21385 0.7 0.686476
Target:  5'- cGaCAUCCUCAaCGAGGCCUAUgcggaccucagaGAGGGc -3'
miRNA:   3'- aC-GUGGGAGUaGCUCUGGGUG------------CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 23449 0.7 0.686476
Target:  5'- gGCugCC-CGUCucGGCCUACGAGGc -3'
miRNA:   3'- aCGugGGaGUAGcuCUGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 11011 0.7 0.686476
Target:  5'- aGgGCCCcggCcUCGAGGCCCucuGCGAGGa -3'
miRNA:   3'- aCgUGGGa--GuAGCUCUGGG---UGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 115333 0.7 0.69632
Target:  5'- gGCACCCcggacucggUCAUCGAGGCCUuccuggccgGCGuGGcGg -3'
miRNA:   3'- aCGUGGG---------AGUAGCUCUGGG---------UGCuCC-C- -5'
28843 3' -57.3 NC_006146.1 + 114743 0.7 0.69632
Target:  5'- cGCAUCCUCAagGAcGgCCGCGGGGa -3'
miRNA:   3'- aCGUGGGAGUagCUcUgGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 162388 0.7 0.706113
Target:  5'- cGCGCCCgCGccCGGGACCC-CGGuGGGc -3'
miRNA:   3'- aCGUGGGaGUa-GCUCUGGGuGCU-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.