miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 127702 0.7 0.715846
Target:  5'- aGCGCCC-CAUCcccgccuCCCGCGAGGa -3'
miRNA:   3'- aCGUGGGaGUAGcucu---GGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 136753 0.69 0.725511
Target:  5'- -cCACCCUCGcCGGGGCuCCGgGAGGc -3'
miRNA:   3'- acGUGGGAGUaGCUCUG-GGUgCUCCc -5'
28843 3' -57.3 NC_006146.1 + 47559 0.69 0.7351
Target:  5'- aGCuCCCUCggCGAGACCCcUGAcGGc -3'
miRNA:   3'- aCGuGGGAGuaGCUCUGGGuGCUcCC- -5'
28843 3' -57.3 NC_006146.1 + 109179 0.69 0.754014
Target:  5'- --gGCCCUUAgucUGAGGCCCAgacaGAGGGc -3'
miRNA:   3'- acgUGGGAGUa--GCUCUGGGUg---CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 140612 0.69 0.763321
Target:  5'- aGCACCag---CGAaGCCCAgGAGGGg -3'
miRNA:   3'- aCGUGGgaguaGCUcUGGGUgCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 76738 0.69 0.763321
Target:  5'- cGaCAgCUUCGUgGAGGCCCACGGGc- -3'
miRNA:   3'- aC-GUgGGAGUAgCUCUGGGUGCUCcc -5'
28843 3' -57.3 NC_006146.1 + 129838 0.69 0.767014
Target:  5'- gGCcuCCCUCcacccCGAGGCCCccagggccgccgcggACGGGGGg -3'
miRNA:   3'- aCGu-GGGAGua---GCUCUGGG---------------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 144692 0.69 0.771604
Target:  5'- gGCGCCCUUgccuggaggCGAGACugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGua-------GCUCUG-------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 94536 0.69 0.772518
Target:  5'- cGCGCCCUC-UCGuGGCggUCuuGAGGGu -3'
miRNA:   3'- aCGUGGGAGuAGCuCUG--GGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 157319 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 141929 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 145007 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 148085 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 151163 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 154241 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 170687 0.68 0.799361
Target:  5'- gGCGCCC-CG--GGGACCguCGCGGGGGc -3'
miRNA:   3'- aCGUGGGaGUagCUCUGG--GUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 52430 0.68 0.799361
Target:  5'- gGCcucuGCCCUCcaguuugggGUCGAcGCCCugGAGaGGg -3'
miRNA:   3'- aCG----UGGGAG---------UAGCUcUGGGugCUC-CC- -5'
28843 3' -57.3 NC_006146.1 + 125822 0.68 0.80631
Target:  5'- gGCACCCUCccucuc-CCCACGAGGc -3'
miRNA:   3'- aCGUGGGAGuagcucuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 114768 0.68 0.816551
Target:  5'- aGgGCUCUCGgucUCGGGGCCCGCGGc-- -3'
miRNA:   3'- aCgUGGGAGU---AGCUCUGGGUGCUccc -5'
28843 3' -57.3 NC_006146.1 + 109036 0.68 0.816551
Target:  5'- cGCGCCCcCGUgGAGACCUcuGCcccGGGa -3'
miRNA:   3'- aCGUGGGaGUAgCUCUGGG--UGcu-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.