miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 102992 0.68 0.824911
Target:  5'- aGCACCUUCGgcu---CCCACGAGGc -3'
miRNA:   3'- aCGUGGGAGUagcucuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 102584 0.68 0.824911
Target:  5'- cGcCAUCCUC-UCGcGGCCCGagGAGGGc -3'
miRNA:   3'- aC-GUGGGAGuAGCuCUGGGUg-CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 48612 0.67 0.841123
Target:  5'- gUGUuCCagUCGUCGGGugCCGUGGGGGc -3'
miRNA:   3'- -ACGuGGg-AGUAGCUCugGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 151614 0.67 0.841123
Target:  5'- cGCgugACCCgcucCAcCGAGACCCGgcaGGGGGu -3'
miRNA:   3'- aCG---UGGGa---GUaGCUCUGGGUg--CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 47716 0.67 0.841123
Target:  5'- gUGCucgGCCCUCGagaUUGGGGaggUCUugGAGGGg -3'
miRNA:   3'- -ACG---UGGGAGU---AGCUCU---GGGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 42831 0.67 0.848962
Target:  5'- cGCACCUgCAU-GAGGCCgguggucuUGCGGGGGg -3'
miRNA:   3'- aCGUGGGaGUAgCUCUGG--------GUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 44412 0.67 0.848962
Target:  5'- gGCGCCUUCcUCGAGggGCUCcCGGGGu -3'
miRNA:   3'- aCGUGGGAGuAGCUC--UGGGuGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 55066 0.67 0.856613
Target:  5'- gGCGgCCgUAUCG-GACCCACaGcAGGGa -3'
miRNA:   3'- aCGUgGGaGUAGCuCUGGGUG-C-UCCC- -5'
28843 3' -57.3 NC_006146.1 + 13113 0.67 0.85962
Target:  5'- --gGCCCUguUUGuggacgggggcucccGGGCCCACGAGGa -3'
miRNA:   3'- acgUGGGAguAGC---------------UCUGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 138007 0.67 0.864072
Target:  5'- gUGCGCCCcCAgCcGGACCCugGugccaggcAGGGa -3'
miRNA:   3'- -ACGUGGGaGUaGcUCUGGGugC--------UCCC- -5'
28843 3' -57.3 NC_006146.1 + 34177 0.67 0.864072
Target:  5'- gUGCGCCCcCAgCcGGACCCugGugccaggcAGGGa -3'
miRNA:   3'- -ACGUGGGaGUaGcUCUGGGugC--------UCCC- -5'
28843 3' -57.3 NC_006146.1 + 124483 0.67 0.870615
Target:  5'- gGCcCCCUCGuucuacgcgggacUCGGccuggucucGGCCCugGCGAGGGa -3'
miRNA:   3'- aCGuGGGAGU-------------AGCU---------CUGGG--UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 108980 0.67 0.871331
Target:  5'- cGUgaaGgCCUCGgaGGGACCCACGcucAGGGg -3'
miRNA:   3'- aCG---UgGGAGUagCUCUGGGUGC---UCCC- -5'
28843 3' -57.3 NC_006146.1 + 76360 0.67 0.871331
Target:  5'- cGcCACCCUCA---AGACCgcCACGAGaGGg -3'
miRNA:   3'- aC-GUGGGAGUagcUCUGG--GUGCUC-CC- -5'
28843 3' -57.3 NC_006146.1 + 67355 0.67 0.871331
Target:  5'- -cCAUCCUCGgggucCGGGuCCCACGAguacGGGg -3'
miRNA:   3'- acGUGGGAGUa----GCUCuGGGUGCU----CCC- -5'
28843 3' -57.3 NC_006146.1 + 126637 0.66 0.878387
Target:  5'- gGCACaCCc---CGGGGCCCGC-AGGGg -3'
miRNA:   3'- aCGUG-GGaguaGCUCUGGGUGcUCCC- -5'
28843 3' -57.3 NC_006146.1 + 140172 0.66 0.878387
Target:  5'- cGgGCCCUCAuuuUCGucACCCACGAu-- -3'
miRNA:   3'- aCgUGGGAGU---AGCucUGGGUGCUccc -5'
28843 3' -57.3 NC_006146.1 + 129366 0.66 0.878387
Target:  5'- aGCAgCCUCAg-GAGgaGCCCGCGGaucccGGGc -3'
miRNA:   3'- aCGUgGGAGUagCUC--UGGGUGCU-----CCC- -5'
28843 3' -57.3 NC_006146.1 + 147769 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 141614 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.