Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 157821 | 0.66 | 0.885234 |
Target: 5'- aGUACuCCUCcgCGcuGGCCC-CGgAGGGg -3' miRNA: 3'- aCGUG-GGAGuaGCu-CUGGGuGC-UCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 24269 | 0.66 | 0.885234 |
Target: 5'- aUGgACCCaggCcUCGuGACCCugGccGGGGg -3' miRNA: 3'- -ACgUGGGa--GuAGCuCUGGGugC--UCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 162561 | 0.66 | 0.885234 |
Target: 5'- aGCACCC-CAggGAGuacuuGCgCCACgGAGGGu -3' miRNA: 3'- aCGUGGGaGUagCUC-----UG-GGUG-CUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 115624 | 0.66 | 0.885234 |
Target: 5'- cUGCugCC-CAccgCGAGcCCCACGAGc- -3' miRNA: 3'- -ACGugGGaGUa--GCUCuGGGUGCUCcc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 157003 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 153925 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 147769 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 150847 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 141614 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 126637 | 0.66 | 0.878387 |
Target: 5'- gGCACaCCc---CGGGGCCCGC-AGGGg -3' miRNA: 3'- aCGUG-GGaguaGCUCUGGGUGcUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 140172 | 0.66 | 0.878387 |
Target: 5'- cGgGCCCUCAuuuUCGucACCCACGAu-- -3' miRNA: 3'- aCgUGGGAGU---AGCucUGGGUGCUccc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 129366 | 0.66 | 0.878387 |
Target: 5'- aGCAgCCUCAg-GAGgaGCCCGCGGaucccGGGc -3' miRNA: 3'- aCGUgGGAGUagCUC--UGGGUGCU-----CCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 67355 | 0.67 | 0.871331 |
Target: 5'- -cCAUCCUCGgggucCGGGuCCCACGAguacGGGg -3' miRNA: 3'- acGUGGGAGUa----GCUCuGGGUGCU----CCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 76360 | 0.67 | 0.871331 |
Target: 5'- cGcCACCCUCA---AGACCgcCACGAGaGGg -3' miRNA: 3'- aC-GUGGGAGUagcUCUGG--GUGCUC-CC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 108980 | 0.67 | 0.871331 |
Target: 5'- cGUgaaGgCCUCGgaGGGACCCACGcucAGGGg -3' miRNA: 3'- aCG---UgGGAGUagCUCUGGGUGC---UCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 124483 | 0.67 | 0.870615 |
Target: 5'- gGCcCCCUCGuucuacgcgggacUCGGccuggucucGGCCCugGCGAGGGa -3' miRNA: 3'- aCGuGGGAGU-------------AGCU---------CUGGG--UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 34177 | 0.67 | 0.864072 |
Target: 5'- gUGCGCCCcCAgCcGGACCCugGugccaggcAGGGa -3' miRNA: 3'- -ACGUGGGaGUaGcUCUGGGugC--------UCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 138007 | 0.67 | 0.864072 |
Target: 5'- gUGCGCCCcCAgCcGGACCCugGugccaggcAGGGa -3' miRNA: 3'- -ACGUGGGaGUaGcUCUGGGugC--------UCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 13113 | 0.67 | 0.85962 |
Target: 5'- --gGCCCUguUUGuggacgggggcucccGGGCCCACGAGGa -3' miRNA: 3'- acgUGGGAguAGC---------------UCUGGGUGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 55066 | 0.67 | 0.856613 |
Target: 5'- gGCGgCCgUAUCG-GACCCACaGcAGGGa -3' miRNA: 3'- aCGUgGGaGUAGCuCUGGGUG-C-UCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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