Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 42831 | 0.67 | 0.848962 |
Target: 5'- cGCACCUgCAU-GAGGCCgguggucuUGCGGGGGg -3' miRNA: 3'- aCGUGGGaGUAgCUCUGG--------GUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 44412 | 0.67 | 0.848962 |
Target: 5'- gGCGCCUUCcUCGAGggGCUCcCGGGGu -3' miRNA: 3'- aCGUGGGAGuAGCUC--UGGGuGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 48612 | 0.67 | 0.841123 |
Target: 5'- gUGUuCCagUCGUCGGGugCCGUGGGGGc -3' miRNA: 3'- -ACGuGGg-AGUAGCUCugGGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 47716 | 0.67 | 0.841123 |
Target: 5'- gUGCucgGCCCUCGagaUUGGGGaggUCUugGAGGGg -3' miRNA: 3'- -ACG---UGGGAGU---AGCUCU---GGGugCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 151614 | 0.67 | 0.841123 |
Target: 5'- cGCgugACCCgcucCAcCGAGACCCGgcaGGGGGu -3' miRNA: 3'- aCG---UGGGa---GUaGCUCUGGGUg--CUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 102992 | 0.68 | 0.824911 |
Target: 5'- aGCACCUUCGgcu---CCCACGAGGc -3' miRNA: 3'- aCGUGGGAGUagcucuGGGUGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 102584 | 0.68 | 0.824911 |
Target: 5'- cGcCAUCCUC-UCGcGGCCCGagGAGGGc -3' miRNA: 3'- aC-GUGGGAGuAGCuCUGGGUg-CUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 109036 | 0.68 | 0.816551 |
Target: 5'- cGCGCCCcCGUgGAGACCUcuGCcccGGGa -3' miRNA: 3'- aCGUGGGaGUAgCUCUGGG--UGcu-CCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 114768 | 0.68 | 0.816551 |
Target: 5'- aGgGCUCUCGgucUCGGGGCCCGCGGc-- -3' miRNA: 3'- aCgUGGGAGU---AGCUCUGGGUGCUccc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 125822 | 0.68 | 0.80631 |
Target: 5'- gGCACCCUCccucuc-CCCACGAGGc -3' miRNA: 3'- aCGUGGGAGuagcucuGGGUGCUCCc -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 52430 | 0.68 | 0.799361 |
Target: 5'- gGCcucuGCCCUCcaguuugggGUCGAcGCCCugGAGaGGg -3' miRNA: 3'- aCG----UGGGAG---------UAGCUcUGGGugCUC-CC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 170687 | 0.68 | 0.799361 |
Target: 5'- gGCGCCC-CG--GGGACCguCGCGGGGGc -3' miRNA: 3'- aCGUGGGaGUagCUCUGG--GUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 141929 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 145007 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 148085 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 151163 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 154241 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 157319 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 94536 | 0.69 | 0.772518 |
Target: 5'- cGCGCCCUC-UCGuGGCggUCuuGAGGGu -3' miRNA: 3'- aCGUGGGAGuAGCuCUG--GGugCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 144692 | 0.69 | 0.771604 |
Target: 5'- gGCGCCCUUgccuggaggCGAGACugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGua-------GCUCUG-------GGUGCUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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