miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 3164 0.78 0.305891
Target:  5'- cUGCGCCCUgAUCGAGcACCUGCGAucucugguucagaaaGGGg -3'
miRNA:   3'- -ACGUGGGAgUAGCUC-UGGGUGCU---------------CCC- -5'
28843 3' -57.3 NC_006146.1 + 3880 0.66 0.898285
Target:  5'- aGCugCugguCUCggCGAGGCCCaccgACGAGGc -3'
miRNA:   3'- aCGugG----GAGuaGCUCUGGG----UGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 11011 0.7 0.686476
Target:  5'- aGgGCCCcggCcUCGAGGCCCucuGCGAGGa -3'
miRNA:   3'- aCgUGGGa--GuAGCUCUGGG---UGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 13113 0.67 0.85962
Target:  5'- --gGCCCUguUUGuggacgggggcucccGGGCCCACGAGGa -3'
miRNA:   3'- acgUGGGAguAGC---------------UCUGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 17825 0.66 0.898285
Target:  5'- cGCGCCCccugguguccuUCAgcuucaucaaCGAcaccaaGACCUACGAGGGc -3'
miRNA:   3'- aCGUGGG-----------AGUa---------GCU------CUGGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 19620 0.66 0.898285
Target:  5'- gGCccugGCCUUCGauaUCGAGugUCugGGGGa -3'
miRNA:   3'- aCG----UGGGAGU---AGCUCugGGugCUCCc -5'
28843 3' -57.3 NC_006146.1 + 21385 0.7 0.686476
Target:  5'- cGaCAUCCUCAaCGAGGCCUAUgcggaccucagaGAGGGc -3'
miRNA:   3'- aC-GUGGGAGUaGCUCUGGGUG------------CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 23449 0.7 0.686476
Target:  5'- gGCugCC-CGUCucGGCCUACGAGGc -3'
miRNA:   3'- aCGugGGaGUAGcuCUGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 24269 0.66 0.885234
Target:  5'- aUGgACCCaggCcUCGuGACCCugGccGGGGg -3'
miRNA:   3'- -ACgUGGGa--GuAGCuCUGGGugC--UCCC- -5'
28843 3' -57.3 NC_006146.1 + 25830 0.66 0.898285
Target:  5'- gGCACCCUCAUgagGAGAuacaUCCAgCGccAGGGc -3'
miRNA:   3'- aCGUGGGAGUAg--CUCU----GGGU-GC--UCCC- -5'
28843 3' -57.3 NC_006146.1 + 34177 0.67 0.864072
Target:  5'- gUGCGCCCcCAgCcGGACCCugGugccaggcAGGGa -3'
miRNA:   3'- -ACGUGGGaGUaGcUCUGGGugC--------UCCC- -5'
28843 3' -57.3 NC_006146.1 + 39833 0.66 0.885234
Target:  5'- gGCGgCCUCGgcCGcacaguGGGCCgGCGGGGGc -3'
miRNA:   3'- aCGUgGGAGUa-GC------UCUGGgUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 40375 0.66 0.891214
Target:  5'- gGCcCCCUgGUCGccgcccggcgcguAGuagccuCCCGCGGGGGc -3'
miRNA:   3'- aCGuGGGAgUAGC-------------UCu-----GGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 42831 0.67 0.848962
Target:  5'- cGCACCUgCAU-GAGGCCgguggucuUGCGGGGGg -3'
miRNA:   3'- aCGUGGGaGUAgCUCUGG--------GUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 44412 0.67 0.848962
Target:  5'- gGCGCCUUCcUCGAGggGCUCcCGGGGu -3'
miRNA:   3'- aCGUGGGAGuAGCUC--UGGGuGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 47559 0.69 0.7351
Target:  5'- aGCuCCCUCggCGAGACCCcUGAcGGc -3'
miRNA:   3'- aCGuGGGAGuaGCUCUGGGuGCUcCC- -5'
28843 3' -57.3 NC_006146.1 + 47716 0.67 0.841123
Target:  5'- gUGCucgGCCCUCGagaUUGGGGaggUCUugGAGGGg -3'
miRNA:   3'- -ACG---UGGGAGU---AGCUCU---GGGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 48612 0.67 0.841123
Target:  5'- gUGUuCCagUCGUCGGGugCCGUGGGGGc -3'
miRNA:   3'- -ACGuGGg-AGUAGCUCugGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 50025 0.73 0.547658
Target:  5'- aUGCAgCCgggGUCGAGGCgCAgGAGGGa -3'
miRNA:   3'- -ACGUgGGag-UAGCUCUGgGUgCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 52430 0.68 0.799361
Target:  5'- gGCcucuGCCCUCcaguuugggGUCGAcGCCCugGAGaGGg -3'
miRNA:   3'- aCG----UGGGAG---------UAGCUcUGGGugCUC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.