miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 55066 0.67 0.856613
Target:  5'- gGCGgCCgUAUCG-GACCCACaGcAGGGa -3'
miRNA:   3'- aCGUgGGaGUAGCuCUGGGUG-C-UCCC- -5'
28843 3' -57.3 NC_006146.1 + 55427 0.73 0.509204
Target:  5'- cGCGgCCUCGUUGAGACCCGcCGAc-- -3'
miRNA:   3'- aCGUgGGAGUAGCUCUGGGU-GCUccc -5'
28843 3' -57.3 NC_006146.1 + 60658 1.11 0.002026
Target:  5'- gUGCACCCUCAUCGAGACCCACGAGGGg -3'
miRNA:   3'- -ACGUGGGAGUAGCUCUGGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 60949 0.71 0.666668
Target:  5'- --uGCUUUCAUUGAGGCCCGggggUGGGGGg -3'
miRNA:   3'- acgUGGGAGUAGCUCUGGGU----GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 61253 0.66 0.891214
Target:  5'- cUGUcagACCCUCuucagcgAUCGGGcugguCUCACGGGGGc -3'
miRNA:   3'- -ACG---UGGGAG-------UAGCUCu----GGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 67355 0.67 0.871331
Target:  5'- -cCAUCCUCGgggucCGGGuCCCACGAguacGGGg -3'
miRNA:   3'- acGUGGGAGUa----GCUCuGGGUGCU----CCC- -5'
28843 3' -57.3 NC_006146.1 + 67463 0.66 0.891868
Target:  5'- gUGCGCaugugCUCcgCGAaGCCCcgguccaggaGCGAGGGg -3'
miRNA:   3'- -ACGUGg----GAGuaGCUcUGGG----------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 71851 0.7 0.676589
Target:  5'- gGCACCCcgaCAccCGccGGGCCCugGGGGGc -3'
miRNA:   3'- aCGUGGGa--GUa-GC--UCUGGGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 73581 0.66 0.897653
Target:  5'- cGcCAUCCUCuccuccgGUCGAG-CUCACGGGGc -3'
miRNA:   3'- aC-GUGGGAG-------UAGCUCuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 76360 0.67 0.871331
Target:  5'- cGcCACCCUCA---AGACCgcCACGAGaGGg -3'
miRNA:   3'- aC-GUGGGAGUagcUCUGG--GUGCUC-CC- -5'
28843 3' -57.3 NC_006146.1 + 76738 0.69 0.763321
Target:  5'- cGaCAgCUUCGUgGAGGCCCACGGGc- -3'
miRNA:   3'- aC-GUgGGAGUAgCUCUGGGUGCUCcc -5'
28843 3' -57.3 NC_006146.1 + 94536 0.69 0.772518
Target:  5'- cGCGCCCUC-UCGuGGCggUCuuGAGGGu -3'
miRNA:   3'- aCGUGGGAGuAGCuCUG--GGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 95105 0.66 0.891868
Target:  5'- cUGgGCCUg-AUCGAGACCCugGAa-- -3'
miRNA:   3'- -ACgUGGGagUAGCUCUGGGugCUccc -5'
28843 3' -57.3 NC_006146.1 + 96431 0.71 0.636776
Target:  5'- aGCGCCgCUCAaggccaUCGuGGgCCAUGGGGGc -3'
miRNA:   3'- aCGUGG-GAGU------AGCuCUgGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 99367 0.73 0.499764
Target:  5'- gGCGCCCgggccgcgCGUUGAGGCCCAgGAGcGa -3'
miRNA:   3'- aCGUGGGa-------GUAGCUCUGGGUgCUC-Cc -5'
28843 3' -57.3 NC_006146.1 + 101641 0.72 0.55742
Target:  5'- cUGCAUCUUCGagGAGgacccggaccugGCCCugGGGGGa -3'
miRNA:   3'- -ACGUGGGAGUagCUC------------UGGGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 102584 0.68 0.824911
Target:  5'- cGcCAUCCUC-UCGcGGCCCGagGAGGGc -3'
miRNA:   3'- aC-GUGGGAGuAGCuCUGGGUg-CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 102992 0.68 0.824911
Target:  5'- aGCACCUUCGgcu---CCCACGAGGc -3'
miRNA:   3'- aCGUGGGAGUagcucuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 104199 0.73 0.537949
Target:  5'- cUGCGCCCcCA-CGGGGCCgCAagcCGAGGGu -3'
miRNA:   3'- -ACGUGGGaGUaGCUCUGG-GU---GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 106471 0.72 0.564284
Target:  5'- gGCugUCUCGgcgcCGAGACCCcaaguaucaugugcACGGGGGc -3'
miRNA:   3'- aCGugGGAGUa---GCUCUGGG--------------UGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.