miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 108980 0.67 0.871331
Target:  5'- cGUgaaGgCCUCGgaGGGACCCACGcucAGGGg -3'
miRNA:   3'- aCG---UgGGAGUagCUCUGGGUGC---UCCC- -5'
28843 3' -57.3 NC_006146.1 + 109036 0.68 0.816551
Target:  5'- cGCGCCCcCGUgGAGACCUcuGCcccGGGa -3'
miRNA:   3'- aCGUGGGaGUAgCUCUGGG--UGcu-CCC- -5'
28843 3' -57.3 NC_006146.1 + 109179 0.69 0.754014
Target:  5'- --gGCCCUUAgucUGAGGCCCAgacaGAGGGc -3'
miRNA:   3'- acgUGGGAGUa--GCUCUGGGUg---CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 114743 0.7 0.69632
Target:  5'- cGCAUCCUCAagGAcGgCCGCGGGGa -3'
miRNA:   3'- aCGUGGGAGUagCUcUgGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 114768 0.68 0.816551
Target:  5'- aGgGCUCUCGgucUCGGGGCCCGCGGc-- -3'
miRNA:   3'- aCgUGGGAGU---AGCUCUGGGUGCUccc -5'
28843 3' -57.3 NC_006146.1 + 115333 0.7 0.69632
Target:  5'- gGCACCCcggacucggUCAUCGAGGCCUuccuggccgGCGuGGcGg -3'
miRNA:   3'- aCGUGGG---------AGUAGCUCUGGG---------UGCuCC-C- -5'
28843 3' -57.3 NC_006146.1 + 115624 0.66 0.885234
Target:  5'- cUGCugCC-CAccgCGAGcCCCACGAGc- -3'
miRNA:   3'- -ACGugGGaGUa--GCUCuGGGUGCUCcc -5'
28843 3' -57.3 NC_006146.1 + 124483 0.67 0.870615
Target:  5'- gGCcCCCUCGuucuacgcgggacUCGGccuggucucGGCCCugGCGAGGGa -3'
miRNA:   3'- aCGuGGGAGU-------------AGCU---------CUGGG--UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 125822 0.68 0.80631
Target:  5'- gGCACCCUCccucuc-CCCACGAGGc -3'
miRNA:   3'- aCGUGGGAGuagcucuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 125920 0.66 0.904482
Target:  5'- cUGCGCCUcCGUCG--GCgCACGAGGu -3'
miRNA:   3'- -ACGUGGGaGUAGCucUGgGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 126144 0.71 0.650742
Target:  5'- gGCACCCUCuccccCGAGAgCCCGauuggagccaucaaGGGGGg -3'
miRNA:   3'- aCGUGGGAGua---GCUCU-GGGUg-------------CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 126637 0.66 0.878387
Target:  5'- gGCACaCCc---CGGGGCCCGC-AGGGg -3'
miRNA:   3'- aCGUG-GGaguaGCUCUGGGUGcUCCC- -5'
28843 3' -57.3 NC_006146.1 + 127702 0.7 0.715846
Target:  5'- aGCGCCC-CAUCcccgccuCCCGCGAGGa -3'
miRNA:   3'- aCGUGGGaGUAGcucu---GGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 129366 0.66 0.878387
Target:  5'- aGCAgCCUCAg-GAGgaGCCCGCGGaucccGGGc -3'
miRNA:   3'- aCGUgGGAGUagCUC--UGGGUGCU-----CCC- -5'
28843 3' -57.3 NC_006146.1 + 129838 0.69 0.767014
Target:  5'- gGCcuCCCUCcacccCGAGGCCCccagggccgccgcggACGGGGGg -3'
miRNA:   3'- aCGu-GGGAGua---GCUCUGGG---------------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 136753 0.69 0.725511
Target:  5'- -cCACCCUCGcCGGGGCuCCGgGAGGc -3'
miRNA:   3'- acGUGGGAGUaGCUCUG-GGUgCUCCc -5'
28843 3' -57.3 NC_006146.1 + 138007 0.67 0.864072
Target:  5'- gUGCGCCCcCAgCcGGACCCugGugccaggcAGGGa -3'
miRNA:   3'- -ACGUGGGaGUaGcUCUGGGugC--------UCCC- -5'
28843 3' -57.3 NC_006146.1 + 140172 0.66 0.878387
Target:  5'- cGgGCCCUCAuuuUCGucACCCACGAu-- -3'
miRNA:   3'- aCgUGGGAGU---AGCucUGGGUGCUccc -5'
28843 3' -57.3 NC_006146.1 + 140612 0.69 0.763321
Target:  5'- aGCACCag---CGAaGCCCAgGAGGGg -3'
miRNA:   3'- aCGUGGgaguaGCUcUGGGUgCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 141614 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.