Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 141929 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 142109 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 144030 | 0.71 | 0.616818 |
Target: 5'- gGCGCUCuucuUCAcUGGGAUCUGCGAGGGg -3' miRNA: 3'- aCGUGGG----AGUaGCUCUGGGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 144692 | 0.69 | 0.771604 |
Target: 5'- gGCGCCCUUgccuggaggCGAGACugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGua-------GCUCUG-------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 145007 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 145187 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 147769 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 148085 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 148265 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 150717 | 0.7 | 0.676589 |
Target: 5'- cUGCGCCCcCG--GGGGCCCucugcaaagagGCGAGGGa -3' miRNA: 3'- -ACGUGGGaGUagCUCUGGG-----------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 150847 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 151163 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 151343 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 151614 | 0.67 | 0.841123 |
Target: 5'- cGCgugACCCgcucCAcCGAGACCCGgcaGGGGGu -3' miRNA: 3'- aCG---UGGGa---GUaGCUCUGGGUg--CUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 153925 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 154241 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 154421 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 157003 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 157319 | 0.68 | 0.781596 |
Target: 5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3' miRNA: 3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' |
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28843 | 3' | -57.3 | NC_006146.1 | + | 157499 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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