miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 170687 0.68 0.799361
Target:  5'- gGCGCCC-CG--GGGACCguCGCGGGGGc -3'
miRNA:   3'- aCGUGGGaGUagCUCUGG--GUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 169174 0.66 0.891868
Target:  5'- gGCGCCUgCAgggGGGGCCgGCGGGGc -3'
miRNA:   3'- aCGUGGGaGUag-CUCUGGgUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 168242 0.66 0.891868
Target:  5'- gGCGCCUgCAgggGGGGCCgGCGGGGc -3'
miRNA:   3'- aCGUGGGaGUag-CUCUGGgUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 167310 0.66 0.891868
Target:  5'- gGCGCCUgCAgggGGGGCCgGCGGGGc -3'
miRNA:   3'- aCGUGGGaGUag-CUCUGGgUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 162561 0.66 0.885234
Target:  5'- aGCACCC-CAggGAGuacuuGCgCCACgGAGGGu -3'
miRNA:   3'- aCGUGGGaGUagCUC-----UG-GGUG-CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 162388 0.7 0.706113
Target:  5'- cGCGCCCgCGccCGGGACCC-CGGuGGGc -3'
miRNA:   3'- aCGUGGGaGUa-GCUCUGGGuGCU-CCC- -5'
28843 3' -57.3 NC_006146.1 + 157821 0.66 0.885234
Target:  5'- aGUACuCCUCcgCGcuGGCCC-CGgAGGGg -3'
miRNA:   3'- aCGUG-GGAGuaGCu-CUGGGuGC-UCCC- -5'
28843 3' -57.3 NC_006146.1 + 157499 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 157319 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 157003 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 154421 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 154241 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 153925 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 151614 0.67 0.841123
Target:  5'- cGCgugACCCgcucCAcCGAGACCCGgcaGGGGGu -3'
miRNA:   3'- aCG---UGGGa---GUaGCUCUGGGUg--CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 151343 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 151163 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 150847 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 150717 0.7 0.676589
Target:  5'- cUGCGCCCcCG--GGGGCCCucugcaaagagGCGAGGGa -3'
miRNA:   3'- -ACGUGGGaGUagCUCUGGG-----------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 148265 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 148085 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.