miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 147769 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 145187 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 145007 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 144692 0.69 0.771604
Target:  5'- gGCGCCCUUgccuggaggCGAGACugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGua-------GCUCUG-------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 144030 0.71 0.616818
Target:  5'- gGCGCUCuucuUCAcUGGGAUCUGCGAGGGg -3'
miRNA:   3'- aCGUGGG----AGUaGCUCUGGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 142109 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 141929 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 141614 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 140612 0.69 0.763321
Target:  5'- aGCACCag---CGAaGCCCAgGAGGGg -3'
miRNA:   3'- aCGUGGgaguaGCUcUGGGUgCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 140172 0.66 0.878387
Target:  5'- cGgGCCCUCAuuuUCGucACCCACGAu-- -3'
miRNA:   3'- aCgUGGGAGU---AGCucUGGGUGCUccc -5'
28843 3' -57.3 NC_006146.1 + 138007 0.67 0.864072
Target:  5'- gUGCGCCCcCAgCcGGACCCugGugccaggcAGGGa -3'
miRNA:   3'- -ACGUGGGaGUaGcUCUGGGugC--------UCCC- -5'
28843 3' -57.3 NC_006146.1 + 136753 0.69 0.725511
Target:  5'- -cCACCCUCGcCGGGGCuCCGgGAGGc -3'
miRNA:   3'- acGUGGGAGUaGCUCUG-GGUgCUCCc -5'
28843 3' -57.3 NC_006146.1 + 129838 0.69 0.767014
Target:  5'- gGCcuCCCUCcacccCGAGGCCCccagggccgccgcggACGGGGGg -3'
miRNA:   3'- aCGu-GGGAGua---GCUCUGGG---------------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 129366 0.66 0.878387
Target:  5'- aGCAgCCUCAg-GAGgaGCCCGCGGaucccGGGc -3'
miRNA:   3'- aCGUgGGAGUagCUC--UGGGUGCU-----CCC- -5'
28843 3' -57.3 NC_006146.1 + 127702 0.7 0.715846
Target:  5'- aGCGCCC-CAUCcccgccuCCCGCGAGGa -3'
miRNA:   3'- aCGUGGGaGUAGcucu---GGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 126637 0.66 0.878387
Target:  5'- gGCACaCCc---CGGGGCCCGC-AGGGg -3'
miRNA:   3'- aCGUG-GGaguaGCUCUGGGUGcUCCC- -5'
28843 3' -57.3 NC_006146.1 + 126144 0.71 0.650742
Target:  5'- gGCACCCUCuccccCGAGAgCCCGauuggagccaucaaGGGGGg -3'
miRNA:   3'- aCGUGGGAGua---GCUCU-GGGUg-------------CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 125920 0.66 0.904482
Target:  5'- cUGCGCCUcCGUCG--GCgCACGAGGu -3'
miRNA:   3'- -ACGUGGGaGUAGCucUGgGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 125822 0.68 0.80631
Target:  5'- gGCACCCUCccucuc-CCCACGAGGc -3'
miRNA:   3'- aCGUGGGAGuagcucuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 124483 0.67 0.870615
Target:  5'- gGCcCCCUCGuucuacgcgggacUCGGccuggucucGGCCCugGCGAGGGa -3'
miRNA:   3'- aCGuGGGAGU-------------AGCU---------CUGGG--UGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.