miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 115624 0.66 0.885234
Target:  5'- cUGCugCC-CAccgCGAGcCCCACGAGc- -3'
miRNA:   3'- -ACGugGGaGUa--GCUCuGGGUGCUCcc -5'
28843 3' -57.3 NC_006146.1 + 115333 0.7 0.69632
Target:  5'- gGCACCCcggacucggUCAUCGAGGCCUuccuggccgGCGuGGcGg -3'
miRNA:   3'- aCGUGGG---------AGUAGCUCUGGG---------UGCuCC-C- -5'
28843 3' -57.3 NC_006146.1 + 114768 0.68 0.816551
Target:  5'- aGgGCUCUCGgucUCGGGGCCCGCGGc-- -3'
miRNA:   3'- aCgUGGGAGU---AGCUCUGGGUGCUccc -5'
28843 3' -57.3 NC_006146.1 + 114743 0.7 0.69632
Target:  5'- cGCAUCCUCAagGAcGgCCGCGGGGa -3'
miRNA:   3'- aCGUGGGAGUagCUcUgGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 109179 0.69 0.754014
Target:  5'- --gGCCCUUAgucUGAGGCCCAgacaGAGGGc -3'
miRNA:   3'- acgUGGGAGUa--GCUCUGGGUg---CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 109036 0.68 0.816551
Target:  5'- cGCGCCCcCGUgGAGACCUcuGCcccGGGa -3'
miRNA:   3'- aCGUGGGaGUAgCUCUGGG--UGcu-CCC- -5'
28843 3' -57.3 NC_006146.1 + 108980 0.67 0.871331
Target:  5'- cGUgaaGgCCUCGgaGGGACCCACGcucAGGGg -3'
miRNA:   3'- aCG---UgGGAGUagCUCUGGGUGC---UCCC- -5'
28843 3' -57.3 NC_006146.1 + 106471 0.72 0.564284
Target:  5'- gGCugUCUCGgcgcCGAGACCCcaaguaucaugugcACGGGGGc -3'
miRNA:   3'- aCGugGGAGUa---GCUCUGGG--------------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 104199 0.73 0.537949
Target:  5'- cUGCGCCCcCA-CGGGGCCgCAagcCGAGGGu -3'
miRNA:   3'- -ACGUGGGaGUaGCUCUGG-GU---GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 102992 0.68 0.824911
Target:  5'- aGCACCUUCGgcu---CCCACGAGGc -3'
miRNA:   3'- aCGUGGGAGUagcucuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 102584 0.68 0.824911
Target:  5'- cGcCAUCCUC-UCGcGGCCCGagGAGGGc -3'
miRNA:   3'- aC-GUGGGAGuAGCuCUGGGUg-CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 101641 0.72 0.55742
Target:  5'- cUGCAUCUUCGagGAGgacccggaccugGCCCugGGGGGa -3'
miRNA:   3'- -ACGUGGGAGUagCUC------------UGGGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 99367 0.73 0.499764
Target:  5'- gGCGCCCgggccgcgCGUUGAGGCCCAgGAGcGa -3'
miRNA:   3'- aCGUGGGa-------GUAGCUCUGGGUgCUC-Cc -5'
28843 3' -57.3 NC_006146.1 + 96431 0.71 0.636776
Target:  5'- aGCGCCgCUCAaggccaUCGuGGgCCAUGGGGGc -3'
miRNA:   3'- aCGUGG-GAGU------AGCuCUgGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 95105 0.66 0.891868
Target:  5'- cUGgGCCUg-AUCGAGACCCugGAa-- -3'
miRNA:   3'- -ACgUGGGagUAGCUCUGGGugCUccc -5'
28843 3' -57.3 NC_006146.1 + 94536 0.69 0.772518
Target:  5'- cGCGCCCUC-UCGuGGCggUCuuGAGGGu -3'
miRNA:   3'- aCGUGGGAGuAGCuCUG--GGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 76738 0.69 0.763321
Target:  5'- cGaCAgCUUCGUgGAGGCCCACGGGc- -3'
miRNA:   3'- aC-GUgGGAGUAgCUCUGGGUGCUCcc -5'
28843 3' -57.3 NC_006146.1 + 76360 0.67 0.871331
Target:  5'- cGcCACCCUCA---AGACCgcCACGAGaGGg -3'
miRNA:   3'- aC-GUGGGAGUagcUCUGG--GUGCUC-CC- -5'
28843 3' -57.3 NC_006146.1 + 73581 0.66 0.897653
Target:  5'- cGcCAUCCUCuccuccgGUCGAG-CUCACGGGGc -3'
miRNA:   3'- aC-GUGGGAG-------UAGCUCuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 71851 0.7 0.676589
Target:  5'- gGCACCCcgaCAccCGccGGGCCCugGGGGGc -3'
miRNA:   3'- aCGUGGGa--GUa-GC--UCUGGGugCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.