miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 3164 0.78 0.305891
Target:  5'- cUGCGCCCUgAUCGAGcACCUGCGAucucugguucagaaaGGGg -3'
miRNA:   3'- -ACGUGGGAgUAGCUC-UGGGUGCU---------------CCC- -5'
28843 3' -57.3 NC_006146.1 + 170687 0.68 0.799361
Target:  5'- gGCGCCC-CG--GGGACCguCGCGGGGGc -3'
miRNA:   3'- aCGUGGGaGUagCUCUGG--GUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 151614 0.67 0.841123
Target:  5'- cGCgugACCCgcucCAcCGAGACCCGgcaGGGGGu -3'
miRNA:   3'- aCG---UGGGa---GUaGCUCUGGGUg--CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 125920 0.66 0.904482
Target:  5'- cUGCGCCUcCGUCG--GCgCACGAGGu -3'
miRNA:   3'- -ACGUGGGaGUAGCucUGgGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 106471 0.72 0.564284
Target:  5'- gGCugUCUCGgcgcCGAGACCCcaaguaucaugugcACGGGGGc -3'
miRNA:   3'- aCGugGGAGUa---GCUCUGGG--------------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 144030 0.71 0.616818
Target:  5'- gGCGCUCuucuUCAcUGGGAUCUGCGAGGGg -3'
miRNA:   3'- aCGUGGG----AGUaGCUCUGGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 126144 0.71 0.650742
Target:  5'- gGCACCCUCuccccCGAGAgCCCGauuggagccaucaaGGGGGg -3'
miRNA:   3'- aCGUGGGAGua---GCUCU-GGGUg-------------CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 60949 0.71 0.666668
Target:  5'- --uGCUUUCAUUGAGGCCCGggggUGGGGGg -3'
miRNA:   3'- acgUGGGAGUAGCUCUGGGU----GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 127702 0.7 0.715846
Target:  5'- aGCGCCC-CAUCcccgccuCCCGCGAGGa -3'
miRNA:   3'- aCGUGGGaGUAGcucu---GGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 94536 0.69 0.772518
Target:  5'- cGCGCCCUC-UCGuGGCggUCuuGAGGGu -3'
miRNA:   3'- aCGUGGGAGuAGCuCUG--GGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 109179 0.69 0.754014
Target:  5'- --gGCCCUUAgucUGAGGCCCAgacaGAGGGc -3'
miRNA:   3'- acgUGGGAGUa--GCUCUGGGUg---CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 162388 0.7 0.706113
Target:  5'- cGCGCCCgCGccCGGGACCC-CGGuGGGc -3'
miRNA:   3'- aCGUGGGaGUa-GCUCUGGGuGCU-CCC- -5'
28843 3' -57.3 NC_006146.1 + 99367 0.73 0.499764
Target:  5'- gGCGCCCgggccgcgCGUUGAGGCCCAgGAGcGa -3'
miRNA:   3'- aCGUGGGa-------GUAGCUCUGGGUgCUC-Cc -5'
28843 3' -57.3 NC_006146.1 + 140612 0.69 0.763321
Target:  5'- aGCACCag---CGAaGCCCAgGAGGGg -3'
miRNA:   3'- aCGUGGgaguaGCUcUGGGUgCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 55427 0.73 0.509204
Target:  5'- cGCGgCCUCGUUGAGACCCGcCGAc-- -3'
miRNA:   3'- aCGUgGGAGUAGCUCUGGGU-GCUccc -5'
28843 3' -57.3 NC_006146.1 + 150717 0.7 0.676589
Target:  5'- cUGCGCCCcCG--GGGGCCCucugcaaagagGCGAGGGa -3'
miRNA:   3'- -ACGUGGGaGUagCUCUGGG-----------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 129838 0.69 0.767014
Target:  5'- gGCcuCCCUCcacccCGAGGCCCccagggccgccgcggACGGGGGg -3'
miRNA:   3'- aCGu-GGGAGua---GCUCUGGG---------------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 109036 0.68 0.816551
Target:  5'- cGCGCCCcCGUgGAGACCUcuGCcccGGGa -3'
miRNA:   3'- aCGUGGGaGUAgCUCUGGG--UGcu-CCC- -5'
28843 3' -57.3 NC_006146.1 + 104199 0.73 0.537949
Target:  5'- cUGCGCCCcCA-CGGGGCCgCAagcCGAGGGu -3'
miRNA:   3'- -ACGUGGGaGUaGCUCUGG-GU---GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 96431 0.71 0.636776
Target:  5'- aGCGCCgCUCAaggccaUCGuGGgCCAUGGGGGc -3'
miRNA:   3'- aCGUGG-GAGU------AGCuCUgGGUGCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.