miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 162388 0.7 0.706113
Target:  5'- cGCGCCCgCGccCGGGACCC-CGGuGGGc -3'
miRNA:   3'- aCGUGGGaGUa-GCUCUGGGuGCU-CCC- -5'
28843 3' -57.3 NC_006146.1 + 104199 0.73 0.537949
Target:  5'- cUGCGCCCcCA-CGGGGCCgCAagcCGAGGGu -3'
miRNA:   3'- -ACGUGGGaGUaGCUCUGG-GU---GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 125920 0.66 0.904482
Target:  5'- cUGCGCCUcCGUCG--GCgCACGAGGu -3'
miRNA:   3'- -ACGUGGGaGUAGCucUGgGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 129366 0.66 0.878387
Target:  5'- aGCAgCCUCAg-GAGgaGCCCGCGGaucccGGGc -3'
miRNA:   3'- aCGUgGGAGUagCUC--UGGGUGCU-----CCC- -5'
28843 3' -57.3 NC_006146.1 + 170687 0.68 0.799361
Target:  5'- gGCGCCC-CG--GGGACCguCGCGGGGGc -3'
miRNA:   3'- aCGUGGGaGUagCUCUGG--GUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 55427 0.73 0.509204
Target:  5'- cGCGgCCUCGUUGAGACCCGcCGAc-- -3'
miRNA:   3'- aCGUgGGAGUAGCUCUGGGU-GCUccc -5'
28843 3' -57.3 NC_006146.1 + 67355 0.67 0.871331
Target:  5'- -cCAUCCUCGgggucCGGGuCCCACGAguacGGGg -3'
miRNA:   3'- acGUGGGAGUa----GCUCuGGGUGCU----CCC- -5'
28843 3' -57.3 NC_006146.1 + 99367 0.73 0.499764
Target:  5'- gGCGCCCgggccgcgCGUUGAGGCCCAgGAGcGa -3'
miRNA:   3'- aCGUGGGa-------GUAGCUCUGGGUgCUC-Cc -5'
28843 3' -57.3 NC_006146.1 + 3164 0.78 0.305891
Target:  5'- cUGCGCCCUgAUCGAGcACCUGCGAucucugguucagaaaGGGg -3'
miRNA:   3'- -ACGUGGGAgUAGCUC-UGGGUGCU---------------CCC- -5'
28843 3' -57.3 NC_006146.1 + 109036 0.68 0.816551
Target:  5'- cGCGCCCcCGUgGAGACCUcuGCcccGGGa -3'
miRNA:   3'- aCGUGGGaGUAgCUCUGGG--UGcu-CCC- -5'
28843 3' -57.3 NC_006146.1 + 168242 0.66 0.891868
Target:  5'- gGCGCCUgCAgggGGGGCCgGCGGGGc -3'
miRNA:   3'- aCGUGGGaGUag-CUCUGGgUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 126144 0.71 0.650742
Target:  5'- gGCACCCUCuccccCGAGAgCCCGauuggagccaucaaGGGGGg -3'
miRNA:   3'- aCGUGGGAGua---GCUCU-GGGUg-------------CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 106471 0.72 0.564284
Target:  5'- gGCugUCUCGgcgcCGAGACCCcaaguaucaugugcACGGGGGc -3'
miRNA:   3'- aCGugGGAGUa---GCUCUGGG--------------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 55066 0.67 0.856613
Target:  5'- gGCGgCCgUAUCG-GACCCACaGcAGGGa -3'
miRNA:   3'- aCGUgGGaGUAGCuCUGGGUG-C-UCCC- -5'
28843 3' -57.3 NC_006146.1 + 157821 0.66 0.885234
Target:  5'- aGUACuCCUCcgCGcuGGCCC-CGgAGGGg -3'
miRNA:   3'- aCGUG-GGAGuaGCu-CUGGGuGC-UCCC- -5'
28843 3' -57.3 NC_006146.1 + 162561 0.66 0.885234
Target:  5'- aGCACCC-CAggGAGuacuuGCgCCACgGAGGGu -3'
miRNA:   3'- aCGUGGGaGUagCUC-----UG-GGUG-CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 24269 0.66 0.885234
Target:  5'- aUGgACCCaggCcUCGuGACCCugGccGGGGg -3'
miRNA:   3'- -ACgUGGGa--GuAGCuCUGGGugC--UCCC- -5'
28843 3' -57.3 NC_006146.1 + 102992 0.68 0.824911
Target:  5'- aGCACCUUCGgcu---CCCACGAGGc -3'
miRNA:   3'- aCGUGGGAGUagcucuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 13113 0.67 0.85962
Target:  5'- --gGCCCUguUUGuggacgggggcucccGGGCCCACGAGGa -3'
miRNA:   3'- acgUGGGAguAGC---------------UCUGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 47716 0.67 0.841123
Target:  5'- gUGCucgGCCCUCGagaUUGGGGaggUCUugGAGGGg -3'
miRNA:   3'- -ACG---UGGGAGU---AGCUCU---GGGugCUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.