Results 41 - 60 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 60658 | 1.11 | 0.002026 |
Target: 5'- gUGCACCCUCAUCGAGACCCACGAGGGg -3' miRNA: 3'- -ACGUGGGAGUAGCUCUGGGUGCUCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 25830 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUCAUgagGAGAuacaUCCAgCGccAGGGc -3' miRNA: 3'- aCGUGGGAGUAg--CUCU----GGGU-GC--UCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 151343 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 142109 | 0.66 | 0.898285 |
Target: 5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3' miRNA: 3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 23449 | 0.7 | 0.686476 |
Target: 5'- gGCugCC-CGUCucGGCCUACGAGGc -3' miRNA: 3'- aCGugGGaGUAGcuCUGGGUGCUCCc -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 114743 | 0.7 | 0.69632 |
Target: 5'- cGCAUCCUCAagGAcGgCCGCGGGGa -3' miRNA: 3'- aCGUGGGAGUagCUcUgGGUGCUCCc -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 140172 | 0.66 | 0.878387 |
Target: 5'- cGgGCCCUCAuuuUCGucACCCACGAu-- -3' miRNA: 3'- aCgUGGGAGU---AGCucUGGGUGCUccc -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 108980 | 0.67 | 0.871331 |
Target: 5'- cGUgaaGgCCUCGgaGGGACCCACGcucAGGGg -3' miRNA: 3'- aCG---UgGGAGUagCUCUGGGUGC---UCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 76360 | 0.67 | 0.871331 |
Target: 5'- cGcCACCCUCA---AGACCgcCACGAGaGGg -3' miRNA: 3'- aC-GUGGGAGUagcUCUGG--GUGCUC-CC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 124483 | 0.67 | 0.870615 |
Target: 5'- gGCcCCCUCGuucuacgcgggacUCGGccuggucucGGCCCugGCGAGGGa -3' miRNA: 3'- aCGuGGGAGU-------------AGCU---------CUGGG--UGCUCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 13113 | 0.67 | 0.85962 |
Target: 5'- --gGCCCUguUUGuggacgggggcucccGGGCCCACGAGGa -3' miRNA: 3'- acgUGGGAguAGC---------------UCUGGGUGCUCCc -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 47716 | 0.67 | 0.841123 |
Target: 5'- gUGCucgGCCCUCGagaUUGGGGaggUCUugGAGGGg -3' miRNA: 3'- -ACG---UGGGAGU---AGCUCU---GGGugCUCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 102992 | 0.68 | 0.824911 |
Target: 5'- aGCACCUUCGgcu---CCCACGAGGc -3' miRNA: 3'- aCGUGGGAGUagcucuGGGUGCUCCc -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 162561 | 0.66 | 0.885234 |
Target: 5'- aGCACCC-CAggGAGuacuuGCgCCACgGAGGGu -3' miRNA: 3'- aCGUGGGaGUagCUC-----UG-GGUG-CUCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 24269 | 0.66 | 0.885234 |
Target: 5'- aUGgACCCaggCcUCGuGACCCugGccGGGGg -3' miRNA: 3'- -ACgUGGGa--GuAGCuCUGGGugC--UCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 126637 | 0.66 | 0.878387 |
Target: 5'- gGCACaCCc---CGGGGCCCGC-AGGGg -3' miRNA: 3'- aCGUG-GGaguaGCUCUGGGUGcUCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 61253 | 0.66 | 0.891214 |
Target: 5'- cUGUcagACCCUCuucagcgAUCGGGcugguCUCACGGGGGc -3' miRNA: 3'- -ACG---UGGGAG-------UAGCUCu----GGGUGCUCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 40375 | 0.66 | 0.891214 |
Target: 5'- gGCcCCCUgGUCGccgcccggcgcguAGuagccuCCCGCGGGGGc -3' miRNA: 3'- aCGuGGGAgUAGC-------------UCu-----GGGUGCUCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 141614 | 0.66 | 0.884559 |
Target: 5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3' miRNA: 3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5' |
|||||||
28843 | 3' | -57.3 | NC_006146.1 | + | 115333 | 0.7 | 0.69632 |
Target: 5'- gGCACCCcggacucggUCAUCGAGGCCUuccuggccgGCGuGGcGg -3' miRNA: 3'- aCGUGGG---------AGUAGCUCUGGG---------UGCuCC-C- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home