miRNA display CGI


Results 61 - 80 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 145187 0.66 0.898285
Target:  5'- gGCACCCUgaggugcuccucCGUCcucuggacuaGGGGCCCugggcccCGAGGGc -3'
miRNA:   3'- aCGUGGGA------------GUAG----------CUCUGGGu------GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 126637 0.66 0.878387
Target:  5'- gGCACaCCc---CGGGGCCCGC-AGGGg -3'
miRNA:   3'- aCGUG-GGaguaGCUCUGGGUGcUCCC- -5'
28843 3' -57.3 NC_006146.1 + 108980 0.67 0.871331
Target:  5'- cGUgaaGgCCUCGgaGGGACCCACGcucAGGGg -3'
miRNA:   3'- aCG---UgGGAGUagCUCUGGGUGC---UCCC- -5'
28843 3' -57.3 NC_006146.1 + 76360 0.67 0.871331
Target:  5'- cGcCACCCUCA---AGACCgcCACGAGaGGg -3'
miRNA:   3'- aC-GUGGGAGUagcUCUGG--GUGCUC-CC- -5'
28843 3' -57.3 NC_006146.1 + 136753 0.69 0.725511
Target:  5'- -cCACCCUCGcCGGGGCuCCGgGAGGc -3'
miRNA:   3'- acGUGGGAGUaGCUCUG-GGUgCUCCc -5'
28843 3' -57.3 NC_006146.1 + 76738 0.69 0.763321
Target:  5'- cGaCAgCUUCGUgGAGGCCCACGGGc- -3'
miRNA:   3'- aC-GUgGGAGUAgCUCUGGGUGCUCcc -5'
28843 3' -57.3 NC_006146.1 + 144692 0.69 0.771604
Target:  5'- gGCGCCCUUgccuggaggCGAGACugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGua-------GCUCUG-------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 141929 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 145007 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 148085 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 151163 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 154241 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 157319 0.68 0.781596
Target:  5'- aGgGCCCUgG--GAGGCCCcuguccGCGAGGGa -3'
miRNA:   3'- aCgUGGGAgUagCUCUGGG------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 52430 0.68 0.799361
Target:  5'- gGCcucuGCCCUCcaguuugggGUCGAcGCCCugGAGaGGg -3'
miRNA:   3'- aCG----UGGGAG---------UAGCUcUGGGugCUC-CC- -5'
28843 3' -57.3 NC_006146.1 + 125822 0.68 0.80631
Target:  5'- gGCACCCUCccucuc-CCCACGAGGc -3'
miRNA:   3'- aCGUGGGAGuagcucuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 102584 0.68 0.824911
Target:  5'- cGcCAUCCUC-UCGcGGCCCGagGAGGGc -3'
miRNA:   3'- aC-GUGGGAGuAGCuCUGGGUg-CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 102992 0.68 0.824911
Target:  5'- aGCACCUUCGgcu---CCCACGAGGc -3'
miRNA:   3'- aCGUGGGAGUagcucuGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 47716 0.67 0.841123
Target:  5'- gUGCucgGCCCUCGagaUUGGGGaggUCUugGAGGGg -3'
miRNA:   3'- -ACG---UGGGAGU---AGCUCU---GGGugCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 13113 0.67 0.85962
Target:  5'- --gGCCCUguUUGuggacgggggcucccGGGCCCACGAGGa -3'
miRNA:   3'- acgUGGGAguAGC---------------UCUGGGUGCUCCc -5'
28843 3' -57.3 NC_006146.1 + 124483 0.67 0.870615
Target:  5'- gGCcCCCUCGuucuacgcgggacUCGGccuggucucGGCCCugGCGAGGGa -3'
miRNA:   3'- aCGuGGGAGU-------------AGCU---------CUGGG--UGCUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.