miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28843 3' -57.3 NC_006146.1 + 24269 0.66 0.885234
Target:  5'- aUGgACCCaggCcUCGuGACCCugGccGGGGg -3'
miRNA:   3'- -ACgUGGGa--GuAGCuCUGGGugC--UCCC- -5'
28843 3' -57.3 NC_006146.1 + 108980 0.67 0.871331
Target:  5'- cGUgaaGgCCUCGgaGGGACCCACGcucAGGGg -3'
miRNA:   3'- aCG---UgGGAGUagCUCUGGGUGC---UCCC- -5'
28843 3' -57.3 NC_006146.1 + 126637 0.66 0.878387
Target:  5'- gGCACaCCc---CGGGGCCCGC-AGGGg -3'
miRNA:   3'- aCGUG-GGaguaGCUCUGGGUGcUCCC- -5'
28843 3' -57.3 NC_006146.1 + 140172 0.66 0.878387
Target:  5'- cGgGCCCUCAuuuUCGucACCCACGAu-- -3'
miRNA:   3'- aCgUGGGAGU---AGCucUGGGUGCUccc -5'
28843 3' -57.3 NC_006146.1 + 141614 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 147769 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 150847 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 153925 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 157003 0.66 0.884559
Target:  5'- gGCGCCCUUGccUgGAGGCagagacugggcggCUGCGGGGGa -3'
miRNA:   3'- aCGUGGGAGU--AgCUCUG-------------GGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 39833 0.66 0.885234
Target:  5'- gGCGgCCUCGgcCGcacaguGGGCCgGCGGGGGc -3'
miRNA:   3'- aCGUgGGAGUa-GC------UCUGGgUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 115624 0.66 0.885234
Target:  5'- cUGCugCC-CAccgCGAGcCCCACGAGc- -3'
miRNA:   3'- -ACGugGGaGUa--GCUCuGGGUGCUCcc -5'
28843 3' -57.3 NC_006146.1 + 162561 0.66 0.885234
Target:  5'- aGCACCC-CAggGAGuacuuGCgCCACgGAGGGu -3'
miRNA:   3'- aCGUGGGaGUagCUC-----UG-GGUG-CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 126144 0.71 0.650742
Target:  5'- gGCACCCUCuccccCGAGAgCCCGauuggagccaucaaGGGGGg -3'
miRNA:   3'- aCGUGGGAGua---GCUCU-GGGUg-------------CUCCC- -5'
28843 3' -57.3 NC_006146.1 + 96431 0.71 0.636776
Target:  5'- aGCGCCgCUCAaggccaUCGuGGgCCAUGGGGGc -3'
miRNA:   3'- aCGUGG-GAGU------AGCuCUgGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 144030 0.71 0.616818
Target:  5'- gGCGCUCuucuUCAcUGGGAUCUGCGAGGGg -3'
miRNA:   3'- aCGUGGG----AGUaGCUCUGGGUGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 106471 0.72 0.564284
Target:  5'- gGCugUCUCGgcgcCGAGACCCcaaguaucaugugcACGGGGGc -3'
miRNA:   3'- aCGugGGAGUa---GCUCUGGG--------------UGCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 104199 0.73 0.537949
Target:  5'- cUGCGCCCcCA-CGGGGCCgCAagcCGAGGGu -3'
miRNA:   3'- -ACGUGGGaGUaGCUCUGG-GU---GCUCCC- -5'
28843 3' -57.3 NC_006146.1 + 55427 0.73 0.509204
Target:  5'- cGCGgCCUCGUUGAGACCCGcCGAc-- -3'
miRNA:   3'- aCGUgGGAGUAGCUCUGGGU-GCUccc -5'
28843 3' -57.3 NC_006146.1 + 99367 0.73 0.499764
Target:  5'- gGCGCCCgggccgcgCGUUGAGGCCCAgGAGcGa -3'
miRNA:   3'- aCGUGGGa-------GUAGCUCUGGGUgCUC-Cc -5'
28843 3' -57.3 NC_006146.1 + 125920 0.66 0.904482
Target:  5'- cUGCGCCUcCGUCG--GCgCACGAGGu -3'
miRNA:   3'- -ACGUGGGaGUAGCucUGgGUGCUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.