miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28845 3' -55.9 NC_006146.1 + 70210 0.66 0.918304
Target:  5'- gCAGCGCCg---GGUGCCGaGGGcCGCg -3'
miRNA:   3'- gGUCGCGGacguUUACGGUgUCC-GUG- -5'
28845 3' -55.9 NC_006146.1 + 109608 0.66 0.918304
Target:  5'- gCCGcGCGCC-GCAAAcacGCgACAGGCc- -3'
miRNA:   3'- -GGU-CGCGGaCGUUUa--CGgUGUCCGug -5'
28845 3' -55.9 NC_006146.1 + 78648 0.66 0.918304
Target:  5'- gCCGGgccCGCCccccaGCAGcaGCCACAGGC-Cg -3'
miRNA:   3'- -GGUC---GCGGa----CGUUuaCGGUGUCCGuG- -5'
28845 3' -55.9 NC_006146.1 + 69844 0.66 0.918303
Target:  5'- aCCGGCGagaaGCGGGUa-CGCAGGCGCa -3'
miRNA:   3'- -GGUCGCgga-CGUUUAcgGUGUCCGUG- -5'
28845 3' -55.9 NC_006146.1 + 71785 0.66 0.918303
Target:  5'- -gAGaCGCCUGag---GCCggaggGCAGGCGCg -3'
miRNA:   3'- ggUC-GCGGACguuuaCGG-----UGUCCGUG- -5'
28845 3' -55.9 NC_006146.1 + 110205 0.66 0.912447
Target:  5'- gCGGCcCCaUGCAGuUGCCcgugaGGGCACa -3'
miRNA:   3'- gGUCGcGG-ACGUUuACGGug---UCCGUG- -5'
28845 3' -55.9 NC_006146.1 + 21224 0.66 0.912447
Target:  5'- gUCAGgaaaacgGCCUGCAAGUuCgUGCAGGCGCg -3'
miRNA:   3'- -GGUCg------CGGACGUUUAcG-GUGUCCGUG- -5'
28845 3' -55.9 NC_006146.1 + 12817 0.66 0.912447
Target:  5'- aCGGCGgCUGCcGGUGCgCAUguccaAGGUGCu -3'
miRNA:   3'- gGUCGCgGACGuUUACG-GUG-----UCCGUG- -5'
28845 3' -55.9 NC_006146.1 + 208 0.66 0.912447
Target:  5'- gCCGGUGCCcccGCGAcgGUCcCcgGGGCGCc -3'
miRNA:   3'- -GGUCGCGGa--CGUUuaCGGuG--UCCGUG- -5'
28845 3' -55.9 NC_006146.1 + 121144 0.66 0.912447
Target:  5'- gCCGGCGUCUGg----GCCugGGccGCGCg -3'
miRNA:   3'- -GGUCGCGGACguuuaCGGugUC--CGUG- -5'
28845 3' -55.9 NC_006146.1 + 74637 0.66 0.908817
Target:  5'- gCGGCGCCcccUGUAGuagGCCACguacucgucgcuccgGGGCAg -3'
miRNA:   3'- gGUCGCGG---ACGUUua-CGGUG---------------UCCGUg -5'
28845 3' -55.9 NC_006146.1 + 92981 0.66 0.90635
Target:  5'- cCCGGCaCCUGCGAG-GCCGCccGCc- -3'
miRNA:   3'- -GGUCGcGGACGUUUaCGGUGucCGug -5'
28845 3' -55.9 NC_006146.1 + 107932 0.66 0.905727
Target:  5'- gUCAGCuCCUGgGAGcucaguauuggguUGCCccuaaccuccACAGGCACa -3'
miRNA:   3'- -GGUCGcGGACgUUU-------------ACGG----------UGUCCGUG- -5'
28845 3' -55.9 NC_006146.1 + 40430 0.66 0.900014
Target:  5'- cCCGGgGCg-GCAGcgGCCccguagGCGGGUGCg -3'
miRNA:   3'- -GGUCgCGgaCGUUuaCGG------UGUCCGUG- -5'
28845 3' -55.9 NC_006146.1 + 156291 0.66 0.900014
Target:  5'- gCAGCGCCaGCAgggcacagagguGAUG-UAgAGGCGCg -3'
miRNA:   3'- gGUCGCGGaCGU------------UUACgGUgUCCGUG- -5'
28845 3' -55.9 NC_006146.1 + 99152 0.66 0.893443
Target:  5'- uCCAGCGaCCgGCAGGUGgCGgaGGGC-Ca -3'
miRNA:   3'- -GGUCGC-GGaCGUUUACgGUg-UCCGuG- -5'
28845 3' -55.9 NC_006146.1 + 114710 0.66 0.893443
Target:  5'- uUCuGCGUUccgUGCGugGAUGCCAgGGGCAg -3'
miRNA:   3'- -GGuCGCGG---ACGU--UUACGGUgUCCGUg -5'
28845 3' -55.9 NC_006146.1 + 110579 0.66 0.893443
Target:  5'- aCCAGCGgUUGCGGuggGUCucgaccgucagGCAGGCAa -3'
miRNA:   3'- -GGUCGCgGACGUUua-CGG-----------UGUCCGUg -5'
28845 3' -55.9 NC_006146.1 + 143631 0.66 0.893443
Target:  5'- gCCGGCGaugaCgGUGGAggugGCCcCGGGCGCa -3'
miRNA:   3'- -GGUCGCg---GaCGUUUa---CGGuGUCCGUG- -5'
28845 3' -55.9 NC_006146.1 + 155942 0.66 0.893443
Target:  5'- gCCGGCGaugaCgGUGGAggugGCCcCGGGCGCa -3'
miRNA:   3'- -GGUCGCg---GaCGUUUa---CGGuGUCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.