miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28845 5' -52.3 NC_006146.1 + 4095 0.66 0.98384
Target:  5'- aCAGcaccGCGGUCAUGGACUugauGACGGCGg -3'
miRNA:   3'- -GUCac--CGUCAGUGUUUGGu---CUGUCGU- -5'
28845 5' -52.3 NC_006146.1 + 83638 0.66 0.98266
Target:  5'- uGGUGGCGGgggCucuGCGGGCCAGACcuccaccuuuggguuGGCc -3'
miRNA:   3'- gUCACCGUCa--G---UGUUUGGUCUG---------------UCGu -5'
28845 5' -52.3 NC_006146.1 + 144906 0.66 0.981838
Target:  5'- -cGUGGaGGUUACAAcCCAGugGCAGCu -3'
miRNA:   3'- guCACCgUCAGUGUUuGGUC--UGUCGu -5'
28845 5' -52.3 NC_006146.1 + 123087 0.66 0.979654
Target:  5'- --cUGGCAGcC-CGAGCCcaugAGACGGCGg -3'
miRNA:   3'- gucACCGUCaGuGUUUGG----UCUGUCGU- -5'
28845 5' -52.3 NC_006146.1 + 9899 0.66 0.97471
Target:  5'- ---aGGCGGUgAC-GGCCAGGCAGgAg -3'
miRNA:   3'- gucaCCGUCAgUGuUUGGUCUGUCgU- -5'
28845 5' -52.3 NC_006146.1 + 125209 0.67 0.971933
Target:  5'- aGGUGGCGGUC---GugCAGGaucCAGCAa -3'
miRNA:   3'- gUCACCGUCAGuguUugGUCU---GUCGU- -5'
28845 5' -52.3 NC_006146.1 + 3800 0.67 0.971933
Target:  5'- -uGUGGCccacAGUCAggucuggguCAGGCCAGGCggGGCAc -3'
miRNA:   3'- guCACCG----UCAGU---------GUUUGGUCUG--UCGU- -5'
28845 5' -52.3 NC_006146.1 + 16529 0.67 0.971933
Target:  5'- uCAGUGGagAGcCACgAGACCgaccagauGGACAGCAu -3'
miRNA:   3'- -GUCACCg-UCaGUG-UUUGG--------UCUGUCGU- -5'
28845 5' -52.3 NC_006146.1 + 16680 0.67 0.968944
Target:  5'- aCGGUGuGCGgcGUUACGccAGCCAGAC-GCAg -3'
miRNA:   3'- -GUCAC-CGU--CAGUGU--UUGGUCUGuCGU- -5'
28845 5' -52.3 NC_006146.1 + 117207 0.67 0.965735
Target:  5'- aGGUGGCAGUCuCAAAcugcugcccCCGGGCuuccuggaaAGCGg -3'
miRNA:   3'- gUCACCGUCAGuGUUU---------GGUCUG---------UCGU- -5'
28845 5' -52.3 NC_006146.1 + 162414 0.67 0.965735
Target:  5'- aAGUGGUGGgCACGGGCUAGGgguguCAGCu -3'
miRNA:   3'- gUCACCGUCaGUGUUUGGUCU-----GUCGu -5'
28845 5' -52.3 NC_006146.1 + 2827 0.67 0.965735
Target:  5'- gCGGUGGCGgaauGUCAC--GCCAGG-AGCGg -3'
miRNA:   3'- -GUCACCGU----CAGUGuuUGGUCUgUCGU- -5'
28845 5' -52.3 NC_006146.1 + 78662 0.67 0.962299
Target:  5'- cCAGcaGCAGcCACAGGCCGGgcccgccccccaGCAGCAg -3'
miRNA:   3'- -GUCacCGUCaGUGUUUGGUC------------UGUCGU- -5'
28845 5' -52.3 NC_006146.1 + 35890 0.67 0.962299
Target:  5'- gGGUGGUGGggugaCGCGGACCacgGGACGGUu -3'
miRNA:   3'- gUCACCGUCa----GUGUUUGG---UCUGUCGu -5'
28845 5' -52.3 NC_006146.1 + 147801 0.67 0.962299
Target:  5'- gCAGcGGCAGUgACAgcaugAACCAGGagaaGGCGc -3'
miRNA:   3'- -GUCaCCGUCAgUGU-----UUGGUCUg---UCGU- -5'
28845 5' -52.3 NC_006146.1 + 128927 0.67 0.95863
Target:  5'- cCAGUggacgaGGCAGUagagCACAcucacGACCAGGCGGUu -3'
miRNA:   3'- -GUCA------CCGUCA----GUGU-----UUGGUCUGUCGu -5'
28845 5' -52.3 NC_006146.1 + 55653 0.68 0.954724
Target:  5'- gGGUGcaGCAGcCG-GAGCCAGGCGGCGu -3'
miRNA:   3'- gUCAC--CGUCaGUgUUUGGUCUGUCGU- -5'
28845 5' -52.3 NC_006146.1 + 44311 0.68 0.954724
Target:  5'- gUAGUGGgGG-CugGGGCCGuGGCAGCc -3'
miRNA:   3'- -GUCACCgUCaGugUUUGGU-CUGUCGu -5'
28845 5' -52.3 NC_006146.1 + 125791 0.68 0.954321
Target:  5'- ---cGGCGGUCACcggccGAGCCGGAgaauggcCGGCAc -3'
miRNA:   3'- gucaCCGUCAGUG-----UUUGGUCU-------GUCGU- -5'
28845 5' -52.3 NC_006146.1 + 107591 0.68 0.946182
Target:  5'- ---cGGCGGUCAgAAugCAGAgGGUg -3'
miRNA:   3'- gucaCCGUCAGUgUUugGUCUgUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.