Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28846 | 3' | -54.6 | NC_006146.1 | + | 168881 | 0.67 | 0.945157 |
Target: 5'- gGCCUagggucaUCGUUGccgcCCcgCAGCGCGACu -3' miRNA: 3'- -UGGAg------AGCAGCu---GGuaGUCGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 126079 | 0.67 | 0.945157 |
Target: 5'- cACCUC-CGUC-ACCAgccgCAGCGgGGCc -3' miRNA: 3'- -UGGAGaGCAGcUGGUa---GUCGCgUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 56512 | 0.67 | 0.945157 |
Target: 5'- gGCCgcggggUCGUCGccgGCCAUCAGCaGCuGACGc -3' miRNA: 3'- -UGGag----AGCAGC---UGGUAGUCG-CG-UUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 93565 | 0.66 | 0.949459 |
Target: 5'- aGCCggcCUCGUCcuucACCAUCAgccugggcauGCGCGACc -3' miRNA: 3'- -UGGa--GAGCAGc---UGGUAGU----------CGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 111660 | 0.66 | 0.953134 |
Target: 5'- cAUCUCUCagaUCcgGGCCAUCAagccaaucccccuGCGCGACGg -3' miRNA: 3'- -UGGAGAGc--AG--CUGGUAGU-------------CGCGUUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 125905 | 0.66 | 0.953531 |
Target: 5'- uCCggCUCGUgGAgucugcgccuCCGUCGGCGC-ACGa -3' miRNA: 3'- uGGa-GAGCAgCU----------GGUAGUCGCGuUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 129318 | 0.66 | 0.953531 |
Target: 5'- gGCCUCUCcgccUCGGCCAgcCAGUagGCGGCc -3' miRNA: 3'- -UGGAGAGc---AGCUGGUa-GUCG--CGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 43475 | 0.66 | 0.960997 |
Target: 5'- aGCCUcCUCGgCGGCCGUugacacCGGCuccgGCGGCGg -3' miRNA: 3'- -UGGA-GAGCaGCUGGUA------GUCG----CGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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