Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28846 | 3' | -54.6 | NC_006146.1 | + | 58529 | 0.68 | 0.908434 |
Target: 5'- uAUCUCUgCaagCGGCCgGUCAGCGUGGCGg -3' miRNA: 3'- -UGGAGA-Gca-GCUGG-UAGUCGCGUUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 5737 | 0.69 | 0.882288 |
Target: 5'- cACCUCUgGUCGcUCA--AGCGCAGCc -3' miRNA: 3'- -UGGAGAgCAGCuGGUagUCGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 85709 | 0.69 | 0.860349 |
Target: 5'- gUCUCUCGuccaUCGGCCAUgucaGGCGUGACa -3' miRNA: 3'- uGGAGAGC----AGCUGGUAg---UCGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 155724 | 0.69 | 0.852618 |
Target: 5'- gGCCgCgcaGUCGGCCuUCAGCGCuuccACGg -3' miRNA: 3'- -UGGaGag-CAGCUGGuAGUCGCGu---UGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 49483 | 0.7 | 0.836567 |
Target: 5'- gGCCgcggUGUCGGCCAggggCGGCGUGGCa -3' miRNA: 3'- -UGGaga-GCAGCUGGUa---GUCGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 42911 | 0.71 | 0.746503 |
Target: 5'- gGCCUCU-GUccCGGCUGUCAGCaGCGGCGc -3' miRNA: 3'- -UGGAGAgCA--GCUGGUAGUCG-CGUUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 44936 | 0.76 | 0.515632 |
Target: 5'- aACCUCUCGU-GGCCAggGGCGCGGgGa -3' miRNA: 3'- -UGGAGAGCAgCUGGUagUCGCGUUgC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 47642 | 0.68 | 0.895819 |
Target: 5'- aGCCgUCUCuGgccgCGGCCcggccCAGCGCGGCGg -3' miRNA: 3'- -UGG-AGAG-Ca---GCUGGua---GUCGCGUUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 43475 | 0.66 | 0.960997 |
Target: 5'- aGCCUcCUCGgCGGCCGUugacacCGGCuccgGCGGCGg -3' miRNA: 3'- -UGGA-GAGCaGCUGGUA------GUCG----CGUUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 111660 | 0.66 | 0.953134 |
Target: 5'- cAUCUCUCagaUCcgGGCCAUCAagccaaucccccuGCGCGACGg -3' miRNA: 3'- -UGGAGAGc--AG--CUGGUAGU-------------CGCGUUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 93565 | 0.66 | 0.949459 |
Target: 5'- aGCCggcCUCGUCcuucACCAUCAgccugggcauGCGCGACc -3' miRNA: 3'- -UGGa--GAGCAGc---UGGUAGU----------CGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 54938 | 0.68 | 0.908434 |
Target: 5'- gGCCUCgaCGUCuGCCcgCGGgGCGACc -3' miRNA: 3'- -UGGAGa-GCAGcUGGuaGUCgCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 56512 | 0.67 | 0.945157 |
Target: 5'- gGCCgcggggUCGUCGccgGCCAUCAGCaGCuGACGc -3' miRNA: 3'- -UGGag----AGCAGC---UGGUAGUCG-CG-UUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 125905 | 0.66 | 0.953531 |
Target: 5'- uCCggCUCGUgGAgucugcgccuCCGUCGGCGC-ACGa -3' miRNA: 3'- uGGa-GAGCAgCU----------GGUAGUCGCGuUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 168881 | 0.67 | 0.945157 |
Target: 5'- gGCCUagggucaUCGUUGccgcCCcgCAGCGCGACu -3' miRNA: 3'- -UGGAg------AGCAGCu---GGuaGUCGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 71880 | 0.68 | 0.891854 |
Target: 5'- gGCCUCUacaCGGCCGUCAcgcggacccuccugcGCGCGGCc -3' miRNA: 3'- -UGGAGAgcaGCUGGUAGU---------------CGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 3621 | 0.69 | 0.867875 |
Target: 5'- cCCUCcCGcCGGCCAUCcccacGCGCGGCc -3' miRNA: 3'- uGGAGaGCaGCUGGUAGu----CGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 57248 | 1.09 | 0.004383 |
Target: 5'- cACCUCUCGUCGACCAUCAGCGCAACGg -3' miRNA: 3'- -UGGAGAGCAGCUGGUAGUCGCGUUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 117868 | 0.71 | 0.765601 |
Target: 5'- uACCUCUCGgcggCGGCCG-CGGC-CAGCc -3' miRNA: 3'- -UGGAGAGCa---GCUGGUaGUCGcGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 100732 | 0.7 | 0.828261 |
Target: 5'- gACCggcCUCGcCGGCCAcCAGCGCccCGg -3' miRNA: 3'- -UGGa--GAGCaGCUGGUaGUCGCGuuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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