Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28846 | 3' | -54.6 | NC_006146.1 | + | 3621 | 0.69 | 0.867875 |
Target: 5'- cCCUCcCGcCGGCCAUCcccacGCGCGGCc -3' miRNA: 3'- uGGAGaGCaGCUGGUAGu----CGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 2689 | 0.69 | 0.867875 |
Target: 5'- cCCUCcCGcCGGCCAUCcccacGCGCGGCc -3' miRNA: 3'- uGGAGaGCaGCUGGUAGu----CGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 1757 | 0.69 | 0.867875 |
Target: 5'- cCCUCcCGcCGGCCAUCcccacGCGCGGCc -3' miRNA: 3'- uGGAGaGCaGCUGGUAGu----CGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 825 | 0.69 | 0.867875 |
Target: 5'- cCCUCcCGcCGGCCAUCcccacGCGCGGCc -3' miRNA: 3'- uGGAGaGCaGCUGGUAGu----CGCGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 113615 | 0.69 | 0.852618 |
Target: 5'- gGCCUcCUgGggGACCGUCAGCuuGACGg -3' miRNA: 3'- -UGGA-GAgCagCUGGUAGUCGcgUUGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 100732 | 0.7 | 0.828261 |
Target: 5'- gACCggcCUCGcCGGCCAcCAGCGCccCGg -3' miRNA: 3'- -UGGa--GAGCaGCUGGUaGUCGCGuuGC- -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 117868 | 0.71 | 0.765601 |
Target: 5'- uACCUCUCGgcggCGGCCG-CGGC-CAGCc -3' miRNA: 3'- -UGGAGAGCa---GCUGGUaGUCGcGUUGc -5' |
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28846 | 3' | -54.6 | NC_006146.1 | + | 129318 | 0.66 | 0.953531 |
Target: 5'- gGCCUCUCcgccUCGGCCAgcCAGUagGCGGCc -3' miRNA: 3'- -UGGAGAGc---AGCUGGUa-GUCG--CGUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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