miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 161761 0.66 0.672074
Target:  5'- uGAgGUCCgagggGGCGCCuGGGCGGG-GGCc -3'
miRNA:   3'- -UUgUAGG-----UCGCGGcCCCGUCCgCUGc -5'
28846 5' -62 NC_006146.1 + 17426 0.66 0.672074
Target:  5'- -cCAUUguGCGCCgucgacGGaGGCAGGCGGa- -3'
miRNA:   3'- uuGUAGguCGCGG------CC-CCGUCCGCUgc -5'
28846 5' -62 NC_006146.1 + 4665 0.66 0.672074
Target:  5'- -cCGUCCuGgGCCGgguGGGCgAGGCGGgGg -3'
miRNA:   3'- uuGUAGGuCgCGGC---CCCG-UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 103658 0.66 0.672074
Target:  5'- aGACGU--AGCGCauggcgggcaucUGGGGCGGGCGGuCGa -3'
miRNA:   3'- -UUGUAggUCGCG------------GCCCCGUCCGCU-GC- -5'
28846 5' -62 NC_006146.1 + 64640 0.66 0.672074
Target:  5'- gGAUGUCUucCGCCGGGGCcAGGgGcACGu -3'
miRNA:   3'- -UUGUAGGucGCGGCCCCG-UCCgC-UGC- -5'
28846 5' -62 NC_006146.1 + 93924 0.66 0.666195
Target:  5'- aGGCGUagaaggCGGCGgCGGGGCuccgcucuccgucccAGGCGACc -3'
miRNA:   3'- -UUGUAg-----GUCGCgGCCCCG---------------UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 14100 0.66 0.652443
Target:  5'- --aGUCCccagGGCgggauGUCGGGGCugcuGGCGGCGg -3'
miRNA:   3'- uugUAGG----UCG-----CGGCCCCGu---CCGCUGC- -5'
28846 5' -62 NC_006146.1 + 139705 0.66 0.652443
Target:  5'- aGGCAUCCauGGUGUCGaGGGUGGGCuguGugGu -3'
miRNA:   3'- -UUGUAGG--UCGCGGC-CCCGUCCG---CugC- -5'
28846 5' -62 NC_006146.1 + 92327 0.66 0.652443
Target:  5'- gGGCGggcCCGGC-CUGGGGCagcugauaugGGGCGGCu -3'
miRNA:   3'- -UUGUa--GGUCGcGGCCCCG----------UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 139963 0.66 0.652443
Target:  5'- -cCGUCUGGCuCauGGGCAGGUGugGg -3'
miRNA:   3'- uuGUAGGUCGcGgcCCCGUCCGCugC- -5'
28846 5' -62 NC_006146.1 + 40878 0.66 0.649492
Target:  5'- --gGUCCGGagacggaGCCGGGGCcucgucugcgauccGGGCG-CGa -3'
miRNA:   3'- uugUAGGUCg------CGGCCCCG--------------UCCGCuGC- -5'
28846 5' -62 NC_006146.1 + 28222 0.66 0.642601
Target:  5'- -cCGUCCGacccaGCCGgaGGGCAGGUGGCu -3'
miRNA:   3'- uuGUAGGUcg---CGGC--CCCGUCCGCUGc -5'
28846 5' -62 NC_006146.1 + 28030 0.66 0.642601
Target:  5'- -cCGUCCGacccaGCCGgaGGGCAGGUGGCu -3'
miRNA:   3'- uuGUAGGUcg---CGGC--CCCGUCCGCUGc -5'
28846 5' -62 NC_006146.1 + 50011 0.66 0.641617
Target:  5'- aGGCgAUCCGGUugaugcaGCCGGGGUcgAGGCG-Ca -3'
miRNA:   3'- -UUG-UAGGUCG-------CGGCCCCG--UCCGCuGc -5'
28846 5' -62 NC_006146.1 + 96445 0.66 0.632752
Target:  5'- -cCAUCguGgGCCaugGGGGCAGG-GACa -3'
miRNA:   3'- uuGUAGguCgCGG---CCCCGUCCgCUGc -5'
28846 5' -62 NC_006146.1 + 150710 0.66 0.632752
Target:  5'- cAGCcUCCuGCGCCcccgGGGGCccucugcaaagAGGCGAgGg -3'
miRNA:   3'- -UUGuAGGuCGCGG----CCCCG-----------UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 162851 0.66 0.622902
Target:  5'- aGACAcccCCAGgGCCGGGuccaGCGGGUGccaGCGa -3'
miRNA:   3'- -UUGUa--GGUCgCGGCCC----CGUCCGC---UGC- -5'
28846 5' -62 NC_006146.1 + 52694 0.66 0.622902
Target:  5'- -uCGUCCAGCuCCGGGcgggagguCAGGgGGCGg -3'
miRNA:   3'- uuGUAGGUCGcGGCCCc-------GUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 170508 0.66 0.622902
Target:  5'- gGACccCCAGCGCgcggcgggCGGGGCcugAGGgGGCGc -3'
miRNA:   3'- -UUGuaGGUCGCG--------GCCCCG---UCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 77824 0.66 0.622902
Target:  5'- gGACAggaCGGCGgaGGGGgGGGCGGgGg -3'
miRNA:   3'- -UUGUag-GUCGCggCCCCgUCCGCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.