Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28846 | 5' | -62 | NC_006146.1 | + | 168348 | 0.7 | 0.392248 |
Target: 5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3' miRNA: 3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 167416 | 0.7 | 0.392248 |
Target: 5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3' miRNA: 3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 169042 | 0.7 | 0.393059 |
Target: 5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3' miRNA: 3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 169280 | 0.7 | 0.392248 |
Target: 5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3' miRNA: 3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 38155 | 0.69 | 0.479332 |
Target: 5'- cGGCAUCCGGCcccggagaaCCGGGGCuacuGGgGACc -3' miRNA: 3'- -UUGUAGGUCGc--------GGCCCCGu---CCgCUGc -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 99148 | 0.69 | 0.45243 |
Target: 5'- gGGC-UCCAGCGaCC--GGCAGGUGGCGg -3' miRNA: 3'- -UUGuAGGUCGC-GGccCCGUCCGCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 125087 | 0.69 | 0.470275 |
Target: 5'- -uCAUCCAGacuaugguguCGCCGGGGUcGGCGGu- -3' miRNA: 3'- uuGUAGGUC----------GCGGCCCCGuCCGCUgc -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 55821 | 0.69 | 0.470275 |
Target: 5'- uACAgCCAGCGCCuGGGUGGGCa--- -3' miRNA: 3'- uUGUaGGUCGCGGcCCCGUCCGcugc -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 32131 | 0.69 | 0.470275 |
Target: 5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3' miRNA: 3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 68228 | 0.69 | 0.470275 |
Target: 5'- uACGUCCGGCacagCGGGGgAGGCG-CGg -3' miRNA: 3'- uUGUAGGUCGcg--GCCCCgUCCGCuGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 69612 | 0.69 | 0.479332 |
Target: 5'- aGACGUCCAG-GCCcacguccccGGGGUacuggGGGCGGCu -3' miRNA: 3'- -UUGUAGGUCgCGG---------CCCCG-----UCCGCUGc -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 64406 | 0.69 | 0.497695 |
Target: 5'- gAGCGUUgaugUAG-GCCGGGGCcacGGCGGCGu -3' miRNA: 3'- -UUGUAG----GUCgCGGCCCCGu--CCGCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 116818 | 0.69 | 0.497695 |
Target: 5'- gGGCGUCCAggacguGUGCCGGGaCGcGGCGGCc -3' miRNA: 3'- -UUGUAGGU------CGCGGCCCcGU-CCGCUGc -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 110874 | 0.69 | 0.497695 |
Target: 5'- uGCGUCUcGgGCuCGGGcGCAGGCGGgGa -3' miRNA: 3'- uUGUAGGuCgCG-GCCC-CGUCCGCUgC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 42363 | 0.69 | 0.479332 |
Target: 5'- gGAUcUCCcGCGCCGccaGGGUGGGCGAgGg -3' miRNA: 3'- -UUGuAGGuCGCGGC---CCCGUCCGCUgC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 135961 | 0.69 | 0.470275 |
Target: 5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3' miRNA: 3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 76371 | 0.68 | 0.506994 |
Target: 5'- aGACcgCCAcgagagggcGCGCCGGGGgAGGgaccgggggcgcCGACGg -3' miRNA: 3'- -UUGuaGGU---------CGCGGCCCCgUCC------------GCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 10734 | 0.68 | 0.525808 |
Target: 5'- gGGCAgCCAGagccaGCCGGGGCcauGCGGCu -3' miRNA: 3'- -UUGUaGGUCg----CGGCCCCGuc-CGCUGc -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 21024 | 0.68 | 0.525808 |
Target: 5'- -uUAUCgAGUGCCGGGGauucucggaGGGCGAg- -3' miRNA: 3'- uuGUAGgUCGCGGCCCCg--------UCCGCUgc -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 51821 | 0.68 | 0.506994 |
Target: 5'- cGGCcUCCucgggaAGCGCCGGaGGUGGGCuGCGg -3' miRNA: 3'- -UUGuAGG------UCGCGGCC-CCGUCCGcUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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