miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 57284 1.06 0.001273
Target:  5'- cAACAUCCAGCGCCGGGGCAGGCGACGg -3'
miRNA:   3'- -UUGUAGGUCGCGGCCCCGUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 100702 0.75 0.210154
Target:  5'- cGGCAcCCGGCGCUgcgGGGGUGGGUGugGg -3'
miRNA:   3'- -UUGUaGGUCGCGG---CCCCGUCCGCugC- -5'
28846 5' -62 NC_006146.1 + 53737 0.74 0.259337
Target:  5'- gAGCcgCgGcuGCGCCGGGGCgaagacGGGCGGCGg -3'
miRNA:   3'- -UUGuaGgU--CGCGGCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 25848 0.74 0.259337
Target:  5'- uACAUCCAGCGCCaGGGCuGcGCGcucACGc -3'
miRNA:   3'- uUGUAGGUCGCGGcCCCGuC-CGC---UGC- -5'
28846 5' -62 NC_006146.1 + 123713 0.72 0.310596
Target:  5'- ----cCUGGCGCuCGGGGC-GGCGGCGg -3'
miRNA:   3'- uuguaGGUCGCG-GCCCCGuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 113695 0.72 0.324559
Target:  5'- cGGCcUCCGGC-CCGGGGaC-GGCGGCGg -3'
miRNA:   3'- -UUGuAGGUCGcGGCCCC-GuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 44542 0.71 0.353113
Target:  5'- gGAUAUCCuggaaaaGGgGCCGGGGCuccGGGUGGCu -3'
miRNA:   3'- -UUGUAGG-------UCgCGGCCCCG---UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 105183 0.71 0.361482
Target:  5'- -cCGUCCAGUGaCCGGGGCcGGgGAg- -3'
miRNA:   3'- uuGUAGGUCGC-GGCCCCGuCCgCUgc -5'
28846 5' -62 NC_006146.1 + 48051 0.71 0.369209
Target:  5'- -uCGUCCAGCGCCccGGGCAGcGUG-CGg -3'
miRNA:   3'- uuGUAGGUCGCGGc-CCCGUC-CGCuGC- -5'
28846 5' -62 NC_006146.1 + 53115 0.71 0.369209
Target:  5'- aGGCGgcCCGGC-CCGGGGgAGcGCGACGg -3'
miRNA:   3'- -UUGUa-GGUCGcGGCCCCgUC-CGCUGC- -5'
28846 5' -62 NC_006146.1 + 115538 0.71 0.384998
Target:  5'- gGGCGUCCcGCGCgCGGuGGCgggggcuggAGGCGACc -3'
miRNA:   3'- -UUGUAGGuCGCG-GCC-CCG---------UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 77908 0.71 0.384998
Target:  5'- uAACA---GGCGCaGGGGCGGGCGGCc -3'
miRNA:   3'- -UUGUaggUCGCGgCCCCGUCCGCUGc -5'
28846 5' -62 NC_006146.1 + 170211 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 167416 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 169280 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 168348 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 169042 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 167178 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 168110 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 48621 0.7 0.393059
Target:  5'- -uCGUCgGGUGCCgugGGGGCGGGCuccgGGCGg -3'
miRNA:   3'- uuGUAGgUCGCGG---CCCCGUCCG----CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.