miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 169974 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 64230 0.7 0.417887
Target:  5'- cACAUCUgcgccuGgGCCGGGGCGGGaggGGCGu -3'
miRNA:   3'- uUGUAGGu-----CgCGGCCCCGUCCg--CUGC- -5'
28846 5' -62 NC_006146.1 + 170092 0.7 0.417887
Target:  5'- cGGCGggaggggCCGGCGCCGcaGGGgGGGcCGGCGg -3'
miRNA:   3'- -UUGUa------GGUCGCGGC--CCCgUCC-GCUGC- -5'
28846 5' -62 NC_006146.1 + 51213 0.7 0.43496
Target:  5'- gGGCAUCCAcGagGCCGGGGUggcGGGUGAgGu -3'
miRNA:   3'- -UUGUAGGU-Cg-CGGCCCCG---UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 99148 0.69 0.45243
Target:  5'- gGGC-UCCAGCGaCC--GGCAGGUGGCGg -3'
miRNA:   3'- -UUGuAGGUCGC-GGccCCGUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 55821 0.69 0.470275
Target:  5'- uACAgCCAGCGCCuGGGUGGGCa--- -3'
miRNA:   3'- uUGUaGGUCGCGGcCCCGUCCGcugc -5'
28846 5' -62 NC_006146.1 + 32131 0.69 0.470275
Target:  5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3'
miRNA:   3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 68228 0.69 0.470275
Target:  5'- uACGUCCGGCacagCGGGGgAGGCG-CGg -3'
miRNA:   3'- uUGUAGGUCGcg--GCCCCgUCCGCuGC- -5'
28846 5' -62 NC_006146.1 + 135961 0.69 0.470275
Target:  5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3'
miRNA:   3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 125087 0.69 0.470275
Target:  5'- -uCAUCCAGacuaugguguCGCCGGGGUcGGCGGu- -3'
miRNA:   3'- uuGUAGGUC----------GCGGCCCCGuCCGCUgc -5'
28846 5' -62 NC_006146.1 + 42363 0.69 0.479332
Target:  5'- gGAUcUCCcGCGCCGccaGGGUGGGCGAgGg -3'
miRNA:   3'- -UUGuAGGuCGCGGC---CCCGUCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 69612 0.69 0.479332
Target:  5'- aGACGUCCAG-GCCcacguccccGGGGUacuggGGGCGGCu -3'
miRNA:   3'- -UUGUAGGUCgCGG---------CCCCG-----UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 38155 0.69 0.479332
Target:  5'- cGGCAUCCGGCcccggagaaCCGGGGCuacuGGgGACc -3'
miRNA:   3'- -UUGUAGGUCGc--------GGCCCCGu---CCgCUGc -5'
28846 5' -62 NC_006146.1 + 116818 0.69 0.497695
Target:  5'- gGGCGUCCAggacguGUGCCGGGaCGcGGCGGCc -3'
miRNA:   3'- -UUGUAGGU------CGCGGCCCcGU-CCGCUGc -5'
28846 5' -62 NC_006146.1 + 64406 0.69 0.497695
Target:  5'- gAGCGUUgaugUAG-GCCGGGGCcacGGCGGCGu -3'
miRNA:   3'- -UUGUAG----GUCgCGGCCCCGu--CCGCUGC- -5'
28846 5' -62 NC_006146.1 + 110874 0.69 0.497695
Target:  5'- uGCGUCUcGgGCuCGGGcGCAGGCGGgGa -3'
miRNA:   3'- uUGUAGGuCgCG-GCCC-CGUCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 51821 0.68 0.506994
Target:  5'- cGGCcUCCucgggaAGCGCCGGaGGUGGGCuGCGg -3'
miRNA:   3'- -UUGuAGG------UCGCGGCC-CCGUCCGcUGC- -5'
28846 5' -62 NC_006146.1 + 76371 0.68 0.506994
Target:  5'- aGACcgCCAcgagagggcGCGCCGGGGgAGGgaccgggggcgcCGACGg -3'
miRNA:   3'- -UUGuaGGU---------CGCGGCCCCgUCC------------GCUGC- -5'
28846 5' -62 NC_006146.1 + 160367 0.68 0.516367
Target:  5'- uGGCGUCuCAGCGCCcuuGGCAGGCcGCc -3'
miRNA:   3'- -UUGUAG-GUCGCGGcc-CCGUCCGcUGc -5'
28846 5' -62 NC_006146.1 + 34011 0.68 0.516367
Target:  5'- aGGCAgggggGGgGUCGGGGCAGGCgGGCGu -3'
miRNA:   3'- -UUGUagg--UCgCGGCCCCGUCCG-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.