miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 56292 0.68 0.525808
Target:  5'- gGACGUCCAGCGCCGccucgAGGUGGCc -3'
miRNA:   3'- -UUGUAGGUCGCGGCcccg-UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 10734 0.68 0.525808
Target:  5'- gGGCAgCCAGagccaGCCGGGGCcauGCGGCu -3'
miRNA:   3'- -UUGUaGGUCg----CGGCCCCGuc-CGCUGc -5'
28846 5' -62 NC_006146.1 + 21024 0.68 0.525808
Target:  5'- -uUAUCgAGUGCCGGGGauucucggaGGGCGAg- -3'
miRNA:   3'- uuGUAGgUCGCGGCCCCg--------UCCGCUgc -5'
28846 5' -62 NC_006146.1 + 2352 0.68 0.535314
Target:  5'- cAACGUCCuGCgcaaguacgaGCCGGGaCAGGCGuccGCGg -3'
miRNA:   3'- -UUGUAGGuCG----------CGGCCCcGUCCGC---UGC- -5'
28846 5' -62 NC_006146.1 + 118052 0.68 0.535314
Target:  5'- gAGCccCCGG-GCgGGGGC-GGCGGCGg -3'
miRNA:   3'- -UUGuaGGUCgCGgCCCCGuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 55181 0.68 0.544879
Target:  5'- cGCGUCCcaGGCugcgGCCGcGGCGGGCGAgCGu -3'
miRNA:   3'- uUGUAGG--UCG----CGGCcCCGUCCGCU-GC- -5'
28846 5' -62 NC_006146.1 + 56231 0.68 0.544879
Target:  5'- -cCGUCCAGCggguccGCgGGGGCggAGGCGGgGc -3'
miRNA:   3'- uuGUAGGUCG------CGgCCCCG--UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 42760 0.68 0.544879
Target:  5'- cGGCAg-CAGgGCCGacaGGuGCAGGCGGCGc -3'
miRNA:   3'- -UUGUagGUCgCGGC---CC-CGUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 55044 0.68 0.553535
Target:  5'- ----gUCGGgGCCGGGGCcugccacAGGCGGCc -3'
miRNA:   3'- uuguaGGUCgCGGCCCCG-------UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 32139 0.67 0.573882
Target:  5'- uAGCAgguuagCCAGgGCCGuGGCAGGCcGCu -3'
miRNA:   3'- -UUGUa-----GGUCgCGGCcCCGUCCGcUGc -5'
28846 5' -62 NC_006146.1 + 161734 0.67 0.583634
Target:  5'- gAACccuUgUAGC-CCGGGGguGGCGGCu -3'
miRNA:   3'- -UUGu--AgGUCGcGGCCCCguCCGCUGc -5'
28846 5' -62 NC_006146.1 + 139407 0.67 0.583634
Target:  5'- -----aCGGCGCCGGGGgAGGUGcCu -3'
miRNA:   3'- uuguagGUCGCGGCCCCgUCCGCuGc -5'
28846 5' -62 NC_006146.1 + 165376 0.67 0.583634
Target:  5'- cAGCGU--GGCGCCaGGGGuCAGuGCGAUGa -3'
miRNA:   3'- -UUGUAggUCGCGG-CCCC-GUC-CGCUGC- -5'
28846 5' -62 NC_006146.1 + 56857 0.67 0.583634
Target:  5'- gGGCGg-CAGCuuugGCUGGGGCuGGCGGCc -3'
miRNA:   3'- -UUGUagGUCG----CGGCCCCGuCCGCUGc -5'
28846 5' -62 NC_006146.1 + 156905 0.67 0.593418
Target:  5'- cAGCA-CCAGC-CCGGccgaggccuGGguGGCGGCGc -3'
miRNA:   3'- -UUGUaGGUCGcGGCC---------CCguCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 52331 0.67 0.593418
Target:  5'- ----aCguGgGCCGGGGUgcccgGGGCGGCGu -3'
miRNA:   3'- uuguaGguCgCGGCCCCG-----UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 80086 0.67 0.593418
Target:  5'- cAGCA--CAGCGCCuGGGU-GGCGACa -3'
miRNA:   3'- -UUGUagGUCGCGGcCCCGuCCGCUGc -5'
28846 5' -62 NC_006146.1 + 15520 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 55651 0.67 0.603228
Target:  5'- aGGgGUgCAGCaGCCGGaGcCAGGCGGCGu -3'
miRNA:   3'- -UUgUAgGUCG-CGGCCcC-GUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 12441 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.