miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 52694 0.66 0.622902
Target:  5'- -uCGUCCAGCuCCGGGcgggagguCAGGgGGCGg -3'
miRNA:   3'- uuGUAGGUCGcGGCCCc-------GUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 139362 0.67 0.613059
Target:  5'- -----gCGGCGCCGGGGgGGGUGcCu -3'
miRNA:   3'- uuguagGUCGCGGCCCCgUCCGCuGc -5'
28846 5' -62 NC_006146.1 + 114298 0.67 0.613059
Target:  5'- gGACG-CCGGCGaggagaCCGGcGGCGGGCucGGCGc -3'
miRNA:   3'- -UUGUaGGUCGC------GGCC-CCGUCCG--CUGC- -5'
28846 5' -62 NC_006146.1 + 168228 0.67 0.612075
Target:  5'- cGGCGggaggggCCGGCGCCugcagggGGGGCcGGCGGgGc -3'
miRNA:   3'- -UUGUa------GGUCGCGG-------CCCCGuCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 167296 0.67 0.612075
Target:  5'- cGGCGggaggggCCGGCGCCugcagggGGGGCcGGCGGgGc -3'
miRNA:   3'- -UUGUa------GGUCGCGG-------CCCCGuCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 169160 0.67 0.612075
Target:  5'- cGGCGggaggggCCGGCGCCugcagggGGGGCcGGCGGgGc -3'
miRNA:   3'- -UUGUa------GGUCGCGG-------CCCCGuCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 12441 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 21676 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 55651 0.67 0.603228
Target:  5'- aGGgGUgCAGCaGCCGGaGcCAGGCGGCGu -3'
miRNA:   3'- -UUgUAgGUCG-CGGCCcC-GUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 24754 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 15520 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 44504 0.67 0.603228
Target:  5'- cGACccCgGGCGuCCGGGGUuucAGGCuGACGg -3'
miRNA:   3'- -UUGuaGgUCGC-GGCCCCG---UCCG-CUGC- -5'
28846 5' -62 NC_006146.1 + 18598 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 27832 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 156905 0.67 0.593418
Target:  5'- cAGCA-CCAGC-CCGGccgaggccuGGguGGCGGCGc -3'
miRNA:   3'- -UUGUaGGUCGcGGCC---------CCguCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 52331 0.67 0.593418
Target:  5'- ----aCguGgGCCGGGGUgcccgGGGCGGCGu -3'
miRNA:   3'- uuguaGguCgCGGCCCCG-----UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 80086 0.67 0.593418
Target:  5'- cAGCA--CAGCGCCuGGGU-GGCGACa -3'
miRNA:   3'- -UUGUagGUCGCGGcCCCGuCCGCUGc -5'
28846 5' -62 NC_006146.1 + 161734 0.67 0.583634
Target:  5'- gAACccuUgUAGC-CCGGGGguGGCGGCu -3'
miRNA:   3'- -UUGu--AgGUCGcGGCCCCguCCGCUGc -5'
28846 5' -62 NC_006146.1 + 139407 0.67 0.583634
Target:  5'- -----aCGGCGCCGGGGgAGGUGcCu -3'
miRNA:   3'- uuguagGUCGCGGCCCCgUCCGCuGc -5'
28846 5' -62 NC_006146.1 + 165376 0.67 0.583634
Target:  5'- cAGCGU--GGCGCCaGGGGuCAGuGCGAUGa -3'
miRNA:   3'- -UUGUAggUCGCGG-CCCC-GUC-CGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.