miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 165376 0.67 0.583634
Target:  5'- cAGCGU--GGCGCCaGGGGuCAGuGCGAUGa -3'
miRNA:   3'- -UUGUAggUCGCGG-CCCC-GUC-CGCUGC- -5'
28846 5' -62 NC_006146.1 + 32139 0.67 0.573882
Target:  5'- uAGCAgguuagCCAGgGCCGuGGCAGGCcGCu -3'
miRNA:   3'- -UUGUa-----GGUCgCGGCcCCGUCCGcUGc -5'
28846 5' -62 NC_006146.1 + 55044 0.68 0.553535
Target:  5'- ----gUCGGgGCCGGGGCcugccacAGGCGGCc -3'
miRNA:   3'- uuguaGGUCgCGGCCCCG-------UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 55181 0.68 0.544879
Target:  5'- cGCGUCCcaGGCugcgGCCGcGGCGGGCGAgCGu -3'
miRNA:   3'- uUGUAGG--UCG----CGGCcCCGUCCGCU-GC- -5'
28846 5' -62 NC_006146.1 + 56231 0.68 0.544879
Target:  5'- -cCGUCCAGCggguccGCgGGGGCggAGGCGGgGc -3'
miRNA:   3'- uuGUAGGUCG------CGgCCCCG--UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 42760 0.68 0.544879
Target:  5'- cGGCAg-CAGgGCCGacaGGuGCAGGCGGCGc -3'
miRNA:   3'- -UUGUagGUCgCGGC---CC-CGUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 2352 0.68 0.535314
Target:  5'- cAACGUCCuGCgcaaguacgaGCCGGGaCAGGCGuccGCGg -3'
miRNA:   3'- -UUGUAGGuCG----------CGGCCCcGUCCGC---UGC- -5'
28846 5' -62 NC_006146.1 + 118052 0.68 0.535314
Target:  5'- gAGCccCCGG-GCgGGGGC-GGCGGCGg -3'
miRNA:   3'- -UUGuaGGUCgCGgCCCCGuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 21024 0.68 0.525808
Target:  5'- -uUAUCgAGUGCCGGGGauucucggaGGGCGAg- -3'
miRNA:   3'- uuGUAGgUCGCGGCCCCg--------UCCGCUgc -5'
28846 5' -62 NC_006146.1 + 10734 0.68 0.525808
Target:  5'- gGGCAgCCAGagccaGCCGGGGCcauGCGGCu -3'
miRNA:   3'- -UUGUaGGUCg----CGGCCCCGuc-CGCUGc -5'
28846 5' -62 NC_006146.1 + 56292 0.68 0.525808
Target:  5'- gGACGUCCAGCGCCGccucgAGGUGGCc -3'
miRNA:   3'- -UUGUAGGUCGCGGCcccg-UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 160367 0.68 0.516367
Target:  5'- uGGCGUCuCAGCGCCcuuGGCAGGCcGCc -3'
miRNA:   3'- -UUGUAG-GUCGCGGcc-CCGUCCGcUGc -5'
28846 5' -62 NC_006146.1 + 34011 0.68 0.516367
Target:  5'- aGGCAgggggGGgGUCGGGGCAGGCgGGCGu -3'
miRNA:   3'- -UUGUagg--UCgCGGCCCCGUCCG-CUGC- -5'
28846 5' -62 NC_006146.1 + 76371 0.68 0.506994
Target:  5'- aGACcgCCAcgagagggcGCGCCGGGGgAGGgaccgggggcgcCGACGg -3'
miRNA:   3'- -UUGuaGGU---------CGCGGCCCCgUCC------------GCUGC- -5'
28846 5' -62 NC_006146.1 + 51821 0.68 0.506994
Target:  5'- cGGCcUCCucgggaAGCGCCGGaGGUGGGCuGCGg -3'
miRNA:   3'- -UUGuAGG------UCGCGGCC-CCGUCCGcUGC- -5'
28846 5' -62 NC_006146.1 + 64406 0.69 0.497695
Target:  5'- gAGCGUUgaugUAG-GCCGGGGCcacGGCGGCGu -3'
miRNA:   3'- -UUGUAG----GUCgCGGCCCCGu--CCGCUGC- -5'
28846 5' -62 NC_006146.1 + 116818 0.69 0.497695
Target:  5'- gGGCGUCCAggacguGUGCCGGGaCGcGGCGGCc -3'
miRNA:   3'- -UUGUAGGU------CGCGGCCCcGU-CCGCUGc -5'
28846 5' -62 NC_006146.1 + 110874 0.69 0.497695
Target:  5'- uGCGUCUcGgGCuCGGGcGCAGGCGGgGa -3'
miRNA:   3'- uUGUAGGuCgCG-GCCC-CGUCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 38155 0.69 0.479332
Target:  5'- cGGCAUCCGGCcccggagaaCCGGGGCuacuGGgGACc -3'
miRNA:   3'- -UUGUAGGUCGc--------GGCCCCGu---CCgCUGc -5'
28846 5' -62 NC_006146.1 + 42363 0.69 0.479332
Target:  5'- gGAUcUCCcGCGCCGccaGGGUGGGCGAgGg -3'
miRNA:   3'- -UUGuAGGuCGCGGC---CCCGUCCGCUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.